Gene Lcho_1955 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1955 
Symbol 
ID6161744 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2118936 
End bp2119424 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content71% 
IMG OID641664724 
Producthypothetical protein 
Protein accessionYP_001790987 
Protein GI171058638 
COG category[S] Function unknown 
COG ID[COG4446] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCTGGG TGGTCCGTCT GATCATGCTC GGCGTCGGCC TGACGCTGCT GGTGCTGCTG 
GCGGCTCAGC TGGGGCTGTT CCAGGGCCAG GCGCCGGGCG ACCTGGGCGT GCGTGACGGC 
CGGCTGAAGC CCCCGTCGCG CACCCCCAAC AGCGTCAGCA GCCAGGCCGA TCTCTACCCC 
GAGCATCCGC AGCTCGCCTA CGCCCGCATC GAGCCGCTGC CGATGCCGGG CGATGCGCGC 
CAGACGATGG CGCGCCTGCA GGGCGTGGTC GGCGCGATGC GCGGCGCGCG CATCGTCGAG 
CAGAAGGACG ACTACCTCTA CGCCCGCTTC ACCACGCCGC TGATGCGTTA TGTCGACGAT 
GTCGAGTTCT GGCTCGACCC GGTCGCGCAG GTGGTGCAGG TGCGCTCGGC CTCGCGCCTG 
GGCCACGGCG ACCTGGGGCT CAACCGCAAG CGCGTCGAGC AGATCCGGGC GGCACTCGCC 
AGCCCTTGA
 
Protein sequence
MIWVVRLIML GVGLTLLVLL AAQLGLFQGQ APGDLGVRDG RLKPPSRTPN SVSSQADLYP 
EHPQLAYARI EPLPMPGDAR QTMARLQGVV GAMRGARIVE QKDDYLYARF TTPLMRYVDD 
VEFWLDPVAQ VVQVRSASRL GHGDLGLNRK RVEQIRAALA SP