| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1939 |
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| Symbol | |
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| ID | 6163693 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2101058 |
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| End bp | 2103622 |
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| Gene Length | 2565 bp |
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| Protein Length | 854 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641664705 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001790971 |
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| Protein GI | 171058622 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.246541 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCGTCA CCGTCATCCG GATCGATGAC CTGACGCGCC AAGGCATCAC GCAAATCGAA
CAGGCACTGG CGTGGGTGAC GGCCAATCAG AGCCACATGG GGATCGGCAA TGCCGTCGGG
GCGGTGACGG GCGGCAAGGC CGAGGTCGAC CTTCGCGGAT TGAATGCGCC ATTTGCGACC
AGCGCCAACA AGACGCTGGT GTTATTGAAC GGCCGGCGAC TGGTCAACCA TCCGTTCGAT
GGCGCCGCGG TCGATCTCTA TGCCTTGCCG ATGGCGGCCG TGGATCGGAT TGAAATCCTG
CGTGACGGCG CGTCTGCCAT CTACGGCTCG GACGCGATCG GCGGGGTCGT GAACGTGATT
CTCAAGCGTG AGCAGCGCTA TTCCCAGATC AGCGTTGACA CGCAAGGCTC GGAACAGGGC
GGAGGTGCCG TTCGGCGATT CTCCCTGGTG GGCGGCGCCG GCGTACCGGA CGCCGATGGT
TTTCATGTCC AGGGGGCGCT GGACGTCCGT CGGCAGAATC GCCTGGCGGC CCGCGACCGT
CCATTTGCAA GCACCGGCGT TCTGCGCGGA AACTCTGTCG ACTGGACCAG CGGCACGAGC
TTTCCGGGGG ATCTTGACGG TTTCGAACCC TCTCTTCCGA CTTGCGACAA ATCCCCCTCG
CTGCCGAACG ACGATGCCAG TGCCTGCCGC TACGACATCG TCAGCGATCT GGATGCCATA
CCCGCAAACG AGCAACGCAC GGCGCTGTTG CGGGCAGAGT TGAAACTGCT CGATGAATGG
TCGCTGGGCG CCGAGTACCT CTGGGCACGG AATCAGGAAA CCTCGCTGAT CGCCGCCGCC
CCCGCGTACC ACTGCATGCG CGCCGGCAGC GCATTTTTCC CGCTCGAGGC ACCCACCCAA
CTCGTGCCCG AGCTGTGCAG CGGCGCCGAG GGTGTGCCGA TGGTGCCCGG CGGGCTGGTC
GACTGGCGCG AAGTGCCCGC CGGCAAGAGG AAGCGGCAGA ACACCAGCAT CGCCAACCGT
GCCCTGCTGG AACTGAAGGG CGCACTCGGT CAGAACTGGG ATCTCCGTTC AGCAGTCGGT
CGCTCGCAAG GCAGAAGTAC CGAGCGGGTG TTGGCGGGGT ATGTCGACGA CGCCTCGATG
CAACTCGCGG TCTGGAACGG TCTGGTCAAC CCGTTCGGGC CTCAAACCGC AGAAGGACAA
GCCGCCATCG ATGCGGCACA GATCGTCGGC CCGGTGCAGA TCGGGCGCAG CCGGTCCGAT
TTTGCCGATC TGCAGTTGCG CGGCGAATTG GCCCATCTCG ATGCAGGCCC CTTGGCGCTC
GTGATCGGAC TTGAGCATCG AGATGAACGA TCGTCGTTCG ATACCCTGGA TGTCACCGCC
TCGCTGCCCA GCCTTGGTCT CGATCCGAGC GGCGATGCGT CGGGGTCGCG TCGCGTCGAT
GCCATCTACG GAGAAATCGG CTGGCCCGTG ACGCGCGCGC TGGAAATGAC CGTCGCGGCT
CGACTCGACC ACTACAGCGA TTTCGGCAGC ACACTCAACC CGAAACTGGC CATGCGCCTG
CAGGCGACAC CTGAAATCCT GTTTCGTGGG TCGGTCGGCA GCGGTTTTCG GGCCCCCAAC
CTGTACGACA TCCATCGCCC GCAGTCCTTC GGATTCACCT TCGGCAGTTA TGACGATCCG
CGGTATTGCC CGGGCGGCGA AGCCGTCGAC GGCGCCAATG CCGGGGCCGT CTGTGCACAG
CAGTTCAATG TCCGGGTCGC GGGCCCCGCC GCCGACGGCA GGAGCCTCGA CAGCCTTCGG
CCTGAAAAAT CGAAGAATCT TTCATTGGGC ATTCTGGTCG AACCCGTCAG GTCACTGTCG
GTCGGTCTTG ACTTGTGGAC CATCCGTGTC CGGAACCTGA TCGGCGGCCT GCCGGAACAA
GCGGTCTTCG ACGATCCGGC CAAATACGCC GCACGTTATG TCCGGTGCAG CCAGCTGGAG
GCCGGCGGCG GCACCACGGT CAGTCGCGAA CAGCTCGATA CCTGCCTCAA CACGTCGATC
GACCCGATTG CCTATATCGA TCTGCCGACC GAAAACCTGG GCACGCTGCA AACCAGCGGA
CTGGACGTCT CGATGGCCTG GCAGGATGTT CAACAGGCAT GGGGGCGAAT CAGCATCGGC
CTTGACGGCA CCTATGTGCA CAGCTATCGG TACCAGCGCG AACGCAATGG CAGCCATATC
GAGGCCGCCG GGCGTTATGC CGACAACGCA CCGATATTCC GCTGGCAACA CGCCTTCGCG
GTGAACTGGT CACTCGACGC CTGGTCGGTC ACGTTGGCGC AGCGCTTCAA GTCCGGGTAT
GCGGATCAGG CTCCGGAAAA TCACGTGTCG AGTTATGCGC TGCATGACTT GATGGCGCAG
TGGAGCGGCA TTCGTGGCCT GACGTTATCG GCGGGCCTGC GCAATCTGTT CGACCGCGAT
CCGCCGCAGA CGCTGCAACT GAGCCTGTTC CAGGCTGGCT ATGATCCGCG CTTCACCGAT
CCGCTCGGAA GGGTGTTGGC GCTGCGCGCG GCGTATCGAT TCTGA
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| Protein sequence | MPVTVIRIDD LTRQGITQIE QALAWVTANQ SHMGIGNAVG AVTGGKAEVD LRGLNAPFAT
SANKTLVLLN GRRLVNHPFD GAAVDLYALP MAAVDRIEIL RDGASAIYGS DAIGGVVNVI
LKREQRYSQI SVDTQGSEQG GGAVRRFSLV GGAGVPDADG FHVQGALDVR RQNRLAARDR
PFASTGVLRG NSVDWTSGTS FPGDLDGFEP SLPTCDKSPS LPNDDASACR YDIVSDLDAI
PANEQRTALL RAELKLLDEW SLGAEYLWAR NQETSLIAAA PAYHCMRAGS AFFPLEAPTQ
LVPELCSGAE GVPMVPGGLV DWREVPAGKR KRQNTSIANR ALLELKGALG QNWDLRSAVG
RSQGRSTERV LAGYVDDASM QLAVWNGLVN PFGPQTAEGQ AAIDAAQIVG PVQIGRSRSD
FADLQLRGEL AHLDAGPLAL VIGLEHRDER SSFDTLDVTA SLPSLGLDPS GDASGSRRVD
AIYGEIGWPV TRALEMTVAA RLDHYSDFGS TLNPKLAMRL QATPEILFRG SVGSGFRAPN
LYDIHRPQSF GFTFGSYDDP RYCPGGEAVD GANAGAVCAQ QFNVRVAGPA ADGRSLDSLR
PEKSKNLSLG ILVEPVRSLS VGLDLWTIRV RNLIGGLPEQ AVFDDPAKYA ARYVRCSQLE
AGGGTTVSRE QLDTCLNTSI DPIAYIDLPT ENLGTLQTSG LDVSMAWQDV QQAWGRISIG
LDGTYVHSYR YQRERNGSHI EAAGRYADNA PIFRWQHAFA VNWSLDAWSV TLAQRFKSGY
ADQAPENHVS SYALHDLMAQ WSGIRGLTLS AGLRNLFDRD PPQTLQLSLF QAGYDPRFTD
PLGRVLALRA AYRF
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