| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1887 |
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| Symbol | |
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| ID | 6159914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2038039 |
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| End bp | 2040315 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641664649 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_001790919 |
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| Protein GI | 171058570 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0704358 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGA TGCGACCTGA CTTCGGTGCC GGCCTGGCGA GCGGCGCCCC CTTGAAGACC
GACCTGCTCG GCGCCGGCCT GCCCTGGCCG CTGGGTGCGC ACTGGTGCGA CCGGGCGCTC
AATTTCGCGG TCTGGGCGCC CGATGCAAGC CAGCTCGAAC TCTGCCTGTT CGATGCCACC
GGCACGCGCG AACAGGTCCG CCTGAGGCTG CCGGCCTGCA CCGACGGCGT CTGGCACGGC
CGGCTCCAGG CCGATGACCT TGCCCTGCTG ACGATCACCG GCGACGATGC CGGCGACGGC
ATCCCGGACG TCCTGGTCTA TGGCTGGCGG GCCCACGGCC CGTGGGCACC GGCTCAAGGC
CACCGCTTCA ATCCGGCCAA GGTCCTGCTC GACCCGTACG CCACCGAACT GGTGGGCCGC
TACGCCGGCG ACCTGTCGCT CTACCAGGGC CATGACGCCG CCAACCCGCA GCACCCCGAC
ATCCGTGACA ACGCGCCGGT CGCGCTGAAG GCGCTCGTGC GTCGGCCCGA GGGCCGCGCG
GCGGACCGGT CGAGCGCCGT GCCGCGGCCC GAAGGCCCGC GCGTGGCGCC CGAGATGACG
GTGCTCTACG AGGTCCACGT CAAGGGCGCG ACCCGCCTGC ACCCGGACGT GCCCGAGCCC
CTGCGTGGCA GCTATGCCGG CCTGGCCAGC CCGGCCATGA TCGCGCACTA CCGCGCGCTC
GGCGTCACCA CGCTCAGCCT GCTGCCGGTG CATGCCCGCG CCGACGAAGA GCGCCTGCAG
CACCTCGGCC TGACCAACTA CTGGGGCTAC AGCAGCATCG CCTTCCTGGC GCCCGAACCG
CGCTACTGGA GCGGGCGGCC CGGCACGAAC GTGGCCGACG AGTTCCGCGA GATGGTCGCG
AGCCTGCATG CGGCCGGACT CGAGGTGGTG CTCGACGTGG TCTACAACCA CAGTGCCGAG
ACCGACGACA ACGGCCCGAC GCTGAGTTTT CGCGGCCTGG CGAACGCGCG CTACTACCAC
CTCGAAACCC AGCGCGTCGA AGCCCATCAC CCGGATGCGC ACCACCCGGA CGGGCACCAC
GGCGCCCAGC ACCGCCGCGT CTATCAGAAC TGGAGCGGCT GCGGCAACAG CCTGAACCTG
GCCGAACCGC GCGTGGTGCA GCTGGTGATC GAGTCGCTGC GGCACTGGGT GCTGGCGTAT
GGCGTGGACG GCTTCCGCTT CGACTTGGCG CCGATCCTGG CGCGCGGGCG TGACGGCCAG
TTCGGCACGT CGGCCGGTTT CTTCGCGGCG CTGCAGGCCG ATCCGGTGCT GTCGCGCGTC
AAGCTGATCG CCGAGCCCTG GGACATCGGC CCCGGCGGCT ACCAGCTCGG TGGTTTCCCA
CCCGGCTGGC AGGAGTGGAA CGACCAGTTC CGCGACACGC TGCGCACCTG GTGGTTGCGC
TGTGCCGGTG ACCGCGGCGT GCTGGCGCAC CGGCTGGCCG GTTCGAGCAC CCAGTTCCAT
CACGACGGCC GCTCGCCGCT GGCCAGCGTC AACTTCATCA CCGCGCACGA CGGCTTCGGG
CTGCGCGATC TGGTCAGCTT CAACCACAAG CACAACGACG CCAACGGCGA GCACAACCGC
GACGGCCACC ACCACAACTG CAGCTGGAAC TGCGGCGTCG AGGGTGACAC CGACGAGCCC
GAGGTGCTGG CCCTGCGCGC GCGCCTTCAG CGTGCCTTGC TGGCTTGCCT GGTGCTGTCG
CAGGGCACGC CGATGCTGCT GGCCGGCGAC GAGATCGGCC ACAGCCAGCG CGGCAACAAC
AACGCCTACT GCCAGGACAA CCCGCTGACC TGGCTCGACT GGGCCGGCGC CGACCGGGCC
CTGCTTGCCT TTGCGAGCCG GCTGCTGGCG CTGCGCCGCT GCCAGCCGTC GCTGCGCATC
AGCAGCTGGC TGACAGGCCA CGCCGACCGC CACGGCCGCC TCGACGTGCT CTGGTGGCAC
CCCGAAGGCC ACGCGCTGGC CGGGGCCGAC TGGGCTGAAG AACGTGACCG CGCGATGGGC
GTCCGGCTCG ACGCGGGCCA GGGCGCGGCG GCGGCGCTGC TGCTGTTCAA CCCGAATGCA
TCGGTGCGTC GTTTCGTCCT GCCGGCCGGG CGCTGGGTCG CGCAACTGTG CAGCGCCAGT
CTCGACGGCG AGCCCGGCGC CGACCAGCAG CCGTGTGTCG ACGACCTGGT GGCACCGCAC
GGTGCCTGCG ACCTGCCGGC ACGCGCCGTG CTCGTGTTGC TGGATGGCCT GGGGTAG
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| Protein sequence | MTMMRPDFGA GLASGAPLKT DLLGAGLPWP LGAHWCDRAL NFAVWAPDAS QLELCLFDAT
GTREQVRLRL PACTDGVWHG RLQADDLALL TITGDDAGDG IPDVLVYGWR AHGPWAPAQG
HRFNPAKVLL DPYATELVGR YAGDLSLYQG HDAANPQHPD IRDNAPVALK ALVRRPEGRA
ADRSSAVPRP EGPRVAPEMT VLYEVHVKGA TRLHPDVPEP LRGSYAGLAS PAMIAHYRAL
GVTTLSLLPV HARADEERLQ HLGLTNYWGY SSIAFLAPEP RYWSGRPGTN VADEFREMVA
SLHAAGLEVV LDVVYNHSAE TDDNGPTLSF RGLANARYYH LETQRVEAHH PDAHHPDGHH
GAQHRRVYQN WSGCGNSLNL AEPRVVQLVI ESLRHWVLAY GVDGFRFDLA PILARGRDGQ
FGTSAGFFAA LQADPVLSRV KLIAEPWDIG PGGYQLGGFP PGWQEWNDQF RDTLRTWWLR
CAGDRGVLAH RLAGSSTQFH HDGRSPLASV NFITAHDGFG LRDLVSFNHK HNDANGEHNR
DGHHHNCSWN CGVEGDTDEP EVLALRARLQ RALLACLVLS QGTPMLLAGD EIGHSQRGNN
NAYCQDNPLT WLDWAGADRA LLAFASRLLA LRRCQPSLRI SSWLTGHADR HGRLDVLWWH
PEGHALAGAD WAEERDRAMG VRLDAGQGAA AALLLFNPNA SVRRFVLPAG RWVAQLCSAS
LDGEPGADQQ PCVDDLVAPH GACDLPARAV LVLLDGLG
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