| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1883 |
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| Symbol | |
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| ID | 6160293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2033543 |
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| End bp | 2034079 |
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| Gene Length | 537 bp |
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| Protein Length | 178 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664645 |
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| Product | peptide deformylase |
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| Protein accession | YP_001790915 |
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| Protein GI | 171058566 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0735735 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGTCC GCACCATCCT GAAGATGGGC GACCCGCGCC TGTTGCGCAT CGCCCAGCCG
GTCCGACGCT TCGACACGCC TGAACTGCAT CAGCTGGTGC AGGACCTGCG CGACACCATG
GCTGCGGCCA ACGGGGCCGG CATCGCGGCG CCGCAGATCG GTGTCGATCT GGCCGTGGTG
ATCTTCGGTT CTGCGCACAA CCCGCGCTAT CCCGACGCGC CGCCGGTGCC TGCCACGGTG
CTGGTCAATC CGCAGATCGT GGCCCTGTCC GACGACGAGG AAGACGGCTG GGAAGGCTGC
CTGTCGGTGC CCGGACTGCG TGGCGTGGTG CCGCGCTGCA CGCGCATCCG CTACAGCGGT
TTCGATCCAG TCGGCCAGCT GATCGAGCGC GAGGCCGACG GCTTCCACGC CCGCGTCGTC
CAGCACGAAT GCGATCACCT GATCGGCAAG CTCTACCCGA TGCGGGTGCG CGACTTCAGC
CGTTTCGGCT ACACCGAGGT GCTGTTCCCC GGTCTCGACG CGTCGAGCGA CGACTGA
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| Protein sequence | MPVRTILKMG DPRLLRIAQP VRRFDTPELH QLVQDLRDTM AAANGAGIAA PQIGVDLAVV
IFGSAHNPRY PDAPPVPATV LVNPQIVALS DDEEDGWEGC LSVPGLRGVV PRCTRIRYSG
FDPVGQLIER EADGFHARVV QHECDHLIGK LYPMRVRDFS RFGYTEVLFP GLDASSDD
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