| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1850 |
|---|
| Symbol | |
|---|
| ID | 6163372 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2001092 |
|---|
| End bp | 2002123 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641664612 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001790882 |
|---|
| Protein GI | 171058533 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACCCGC TCGTCATCAA CCTGCTCAAC GGCCTCAGCT CGGGGCTGCT GCTGTTCATG
CTCAGCGCCG GGCTGACGCT GATCTTCAGC ATGATGGGCG TGCTGAACTT CGCCCACGCG
AGCTTCTACA TGCTGGGCGC CTACCTCGGC CACAGCCTGG CTGCGCCGCT GGGCTTCTGG
CCGGCGCTGC TGCTGGCGCC GATTGCGGTC GGGCTGCTGG GCGCGCTGTT CGAGCGTGGC
GTGCTGCGCC GCCTGCGTGG CCACGGCCAT GTGCCGGAGC TGCTGGTCAC GTTCGGGCTG
TCGTACGTGG TGCTGGAGGG GGTGCAGCTG CTGTGGGGGC GCGGCCCGGT CGCATTCCAG
CCGCCGGCCT TGTTGCAGGG CACGGCGTTC ACGATCGTGC AGTCGTCGGT TCACGGCCTG
AGCCTCGTGG CCGGCCAGGC CGGCGCCGAG CTGTGCCGCG GTGGCGCCGA CGAGCTGGTG
AGCTGCGCGC GCTTTCCGAT GACCCGCGCC TTCATGATGG TGGTGGCCTT GTTGATGCTG
CTGGCGCTGG GGCTGCTGCT GCGGCGCACC CGCATCGGGC TGGTGATCCA GGCGGCGCTC
GCGCACCCGC AGATGGTCGA GGCGCTGGGT CACGACGTGC CGCGGGTCTT CATGTGGGTG
TTCGGCGGCG GCTGCGCGCT GGCGGCGCTG GCGGGCGTGA TCGGCGGCAT CACCTTCGTC
ACCGAGCCGT CGATGGCCGC GGTGATGGGC AGCATCGTCT TCGTGGTGGT GGTGGTGGGT
GGCATGGGTT CGCTGGCCGG CGCGTTCGTC GGCTCGATCC TGATCGGCCT GCTGCAGACC
CTGCCGCTGG CGGTCGACGG CTCGCTCGCC AGCCTGCTCA ATGCGTTGGG CGCCGGTGTC
GACGCCCGCA CGCCCGGCTG GCCGATCCTG CGCATCACGC TGGCGCAGGC CGCGCCGATC
CTGCCGTATC TGCTGCTGGT GCTGATGCTG ATCGTGCGCC CGCGCGGGCT GCTCGGTGCG
CGCGATGACT GA
|
|---|
| Protein sequence | MDPLVINLLN GLSSGLLLFM LSAGLTLIFS MMGVLNFAHA SFYMLGAYLG HSLAAPLGFW
PALLLAPIAV GLLGALFERG VLRRLRGHGH VPELLVTFGL SYVVLEGVQL LWGRGPVAFQ
PPALLQGTAF TIVQSSVHGL SLVAGQAGAE LCRGGADELV SCARFPMTRA FMMVVALLML
LALGLLLRRT RIGLVIQAAL AHPQMVEALG HDVPRVFMWV FGGGCALAAL AGVIGGITFV
TEPSMAAVMG SIVFVVVVVG GMGSLAGAFV GSILIGLLQT LPLAVDGSLA SLLNALGAGV
DARTPGWPIL RITLAQAAPI LPYLLLVLML IVRPRGLLGA RDD
|
|---|
| |