Gene Lcho_1828 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1828 
Symbol 
ID6163935 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1977795 
End bp1978256 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content73% 
IMG OID641664590 
ProductMarR family transcriptional regulator 
Protein accessionYP_001790860 
Protein GI171058511 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0229599 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAAC CGGTTCCGCA CCCCTTCCTG CCGGCCCAGC CGGGGTACCA CCTGCGCCGG 
CTGCAACAGG CGGCCGTGGC GCTGTTCATG GCGCAGACCA GCGAGTTCGG CATCACGCCG
GTGCAGTTCG CCGCGCTGGT CGCCACCCAC GAACAGCCCG GCCTCGACCA GCGCACGCTG
GCGGCCACCA TCGGTTTCGA CACCTCGACC ATCGGCGGCG TGATCGACCG CCTCGAGCGC
CGCGGCCTGA TCCAGCGCAA CCACGCACCG CACGACCGGC GCGTGCGCCT GCTCACGCTC
ACGCCCGACG GCGAACAGCT GCTGCAGGCC GTGCTGCCGG CCGTGCAGGC CGCGCAGCAG
CAGATCGTGG CGCCGCTGCC GGCGGCCGAC CGCGAGCGGT TCCTGGAGAT GCTGCGCACG
CTGGTCGAGG CGCATCAGGA CGTGCCGCCG CCCAGCGCAT GA
 
Protein sequence
MTEPVPHPFL PAQPGYHLRR LQQAAVALFM AQTSEFGITP VQFAALVATH EQPGLDQRTL 
AATIGFDTST IGGVIDRLER RGLIQRNHAP HDRRVRLLTL TPDGEQLLQA VLPAVQAAQQ
QIVAPLPAAD RERFLEMLRT LVEAHQDVPP PSA