| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1804 |
|---|
| Symbol | |
|---|
| ID | 6163443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1946133 |
|---|
| End bp | 1947338 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641664566 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001790836 |
|---|
| Protein GI | 171058487 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00000010936 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCCCA GCATGACGCC GCCGCCGATC GATCCGCACG CCGATCGGGT CGTCCTCCGG
CCGGACGACG CCACGCCGGT GTTGCTGCCC GACGAGTTGC CCGACAGCGC GCTGGCCGCG
GTGCGGGCGC TGCTGGATCA GGGCGAGTCG CCGAACACGG TGCGCAGCTA CCGCTCGGGG
CTGCGCTACT GGGCGGCGTG GTTCAGCCTG CGCTACGGAC GGCCGCTGGC CTTGCCGCTG
CCGGTGACGG TGGTGCTGCA GTTCGTCGTC GACCACGCCC AGCGGCTCGA TGAAGCCGGC
CGGCTGGTGC ACGAGTTGCC CGTGGCGGTC GACGCCGCGC TGGTCGCTGC CGGGCACAAG
GCCGCGGAGG GCGCGCCGAC GCTGGCCACG CTGGTGCACC GGATCAGCGT GCTGTCGAAG
CTGCATCAGC TGCAGGGGCT GCCCAATCCC TGCAGCGACG GCCGGGTGCG CGAGCTGCTG
TCGCGTACGC GCCGGGGTTA TGCACGCCGC GGCGCGCAGC AGATCAACGC CAAGCCGGCG
CTGACCCGCG AGGCGCTGGA ACGGCTGCTG GCCACCTGCG ACGACTCGCT GGCGGGGCGG
CGCGACCGGG CGCTGCTGCT GTTCGCATTC GCCAGCGGCG GGCGGCGGCG CTCGGAGGTC
ACGGCCGCCA CGCTCGAGAA CACCCGGCGC GTGGGCTCGG CGCTGGCCGG TGCGCCCGCG
GCGGGCTGGA TCTATCAGAT GGGCGTGTCG AAGTCGAATC AGGCCGGGCT CGCGCGTGCC
GACGGCCACA AGCCGATCGT CGGCCGGGCG GCCGAGGCGC TGGAGGCGTG GCTGGACGCC
TGGCGCACCT GGGCCGCGGC GGCGGGTGCG CCGGCGCCGG CCGGGCCGAT CTTCCGCCGT
GTGCGCAAGG CCTTGCCGGC GGGCGCGGTG GCCGAGCCGC TGACACCGCA GTCGGTGCGC
GACATCGTGC GCCGGCGCTG CGCCCTGGCG GGTCTGGACG AGGGCTTTTC GGCCCACTCG
CTGCGCTCGG GTTTCGTCAC CGAAGCGGCG GCGCAGAACA TCCCGATGGC CGAGACGATG
GCGCTGACGG GGCATCGCTC GCCGGCGTCG GTGCTGGGCT ACTTCCGCAA GGGCGAGGTG
CTGAACATGC GCGGGGCCAG CCTGCTGGAC GCCGACGCGC AGGCCGACAA CAAGAAGAAG
CCGTGA
|
|---|
| Protein sequence | MAPSMTPPPI DPHADRVVLR PDDATPVLLP DELPDSALAA VRALLDQGES PNTVRSYRSG
LRYWAAWFSL RYGRPLALPL PVTVVLQFVV DHAQRLDEAG RLVHELPVAV DAALVAAGHK
AAEGAPTLAT LVHRISVLSK LHQLQGLPNP CSDGRVRELL SRTRRGYARR GAQQINAKPA
LTREALERLL ATCDDSLAGR RDRALLLFAF ASGGRRRSEV TAATLENTRR VGSALAGAPA
AGWIYQMGVS KSNQAGLARA DGHKPIVGRA AEALEAWLDA WRTWAAAAGA PAPAGPIFRR
VRKALPAGAV AEPLTPQSVR DIVRRRCALA GLDEGFSAHS LRSGFVTEAA AQNIPMAETM
ALTGHRSPAS VLGYFRKGEV LNMRGASLLD ADAQADNKKK P
|
|---|
| |