| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1788 |
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| Symbol | |
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| ID | 6161482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1930780 |
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| End bp | 1931634 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641664550 |
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| Product | periplasmic binding protein, putative |
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| Protein accession | YP_001790820 |
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| Protein GI | 171058471 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00000000915129 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACAGAC GTGATTTTCT CAACCGCAGC GCAGCACTCG CGCTCGGCCT CGGCCTGAGC
GGCAGCGCCA TCGCCCAGTC GGAGGGCAGC GACGAGCCGA GCGCCCTCGC CAAGGTGCGC
GCGCGCGGTC GGCTGGTGGT CGGCCTGTAC AACGAGCTGC CGCCGTTCCA CGACAAGGGC
GCGGGCATCG AGGTGCACCT GGCACAGGCG CTGGCCGACA AGCTCGGCGT GGCGCTGTCG
CTGCTGCCGT TCACGGCCGA CGAGGACATG CACGACGACC TGCGCAACAT GGTCTGGAAA
GGCCACTACC TCGGCTACGG CCCGGCCGAC GTGCTGCTGC ACGTGCCGGT CGACCGCCCG
CTGATGGACA GCAGCCCGCA GGTCAACATC TTCGGCCCCT ACTGGCGCGA GACCGTGATG
ATCGCCCGCG ATCTGGGCAA GGTGCCCGAG CTCGACGGTC TGGCGCGTCT GACCGGCCAC
CGCATCGCGG TGCCGGGGCT GTCGCTGGCC GGCTGGCTGA TGATCGGCCA CGACAACGGC
GCCCTGCGCG AACAGCTGAC CACCAAGATC CCCAACGGCA TCGAGGCCGC AAGGATGCTG
CAACGCGGCG AAGTGGCGGC CGCCTGCGGC CTGCGCTCGG AGCTGCTGTC GACGCTCAAG
GGTGACAGCC GCTTCGCCAT CACGCCGCTG CCGGTGCCCC GCGCCCCGCG CGACGGCTGG
GCGGTCGGCA TGGCGGTCAA GCGCGGCTCG CTCGACCTGG CCCGCGCCCT GCAAGGCGGC
CTGAACGAAC TGGCCAGCCA GGGCGAACTC AAGCGCATCT TCGCCACCGG CAACCTCGAC
TGGCAGAGCG TCTGA
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| Protein sequence | MDRRDFLNRS AALALGLGLS GSAIAQSEGS DEPSALAKVR ARGRLVVGLY NELPPFHDKG
AGIEVHLAQA LADKLGVALS LLPFTADEDM HDDLRNMVWK GHYLGYGPAD VLLHVPVDRP
LMDSSPQVNI FGPYWRETVM IARDLGKVPE LDGLARLTGH RIAVPGLSLA GWLMIGHDNG
ALREQLTTKI PNGIEAARML QRGEVAAACG LRSELLSTLK GDSRFAITPL PVPRAPRDGW
AVGMAVKRGS LDLARALQGG LNELASQGEL KRIFATGNLD WQSV
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