| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1787 |
|---|
| Symbol | |
|---|
| ID | 6161481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1929502 |
|---|
| End bp | 1930722 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641664549 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001790819 |
|---|
| Protein GI | 171058470 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2081] Predicted flavoproteins |
|---|
| TIGRFAM ID | [TIGR00275] flavoprotein, HI0933 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0000000418833 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAACATT TCGACGTGGT GGTGGTCGGC GCAGGTGCGG CCGGCCTTTT TTGTGCGGGC
GTCGCCGGCC AGCGGGGCCT GCGCGTGCTG CTGCTGGACC ACGCCCCCAA GCTGGCCGAG
AAGATCCGCA TCTCCGGCGG CGGGCGCTGC AACTTCACCA ACCGTGAGGC TGCGCCCGCC
AACTTCCTGT CCGACAACCC GCACTTCTGC CGCTCGGCGC TGGCGCGCTA CGGCGCCGCC
GACTTCATCG CGCTGGTGCG CCGCCACGGC ATCGCCTTCC ACGAAAAGCA CCGCGGCCAG
CTGTTCTGCG ACCACAGCGC CGAAGACATC ATCACGATGC TGCTGCGCGA ATGCGAAGCC
GGCGCGGTGG TGCGTCGCCA GCCGTGCCGC GTGCAGGCCG TGCGCCATGT TGCCGACGGC
CATGAACTCG ACACCGACGC CGGGCCGGTG CGCACGCACC AGCTCGTCAT CGCCACCGGC
GGCCTGCCGA TCCCCAAGAT CGGCGCCACC GACTGGGGCC TGCGGCTGGC CGAGCGCAGC
GGCCACCGCA TCGTCGCCCC GCGTCCGGCG CTGGTGCCGC TGACCTTCGA CGCGCAGACC
TGGGCGCCCT ACGCGGCGCT CGCCGGCCTG GCCTTGCCGG TGCAGATCAG CACCGGCAGC
GGCAAGCAGC GCACGGTGTT CCAGGAGGAT CTGCTGTTCA CGCACCGCGG CCTGAGCGGC
CCGGCGGTGC TGCAGATCTC GAGCTACTGG CGCCCCGGCC AGGCGCTGAG CATCGACCTG
ACCCACGGCG GCGATCTGGG TGGCGCCCTG CTGGCGGCCA AGCTGACGTC GAAACGGCAG
CTCGGCAACG AACTGGCGCA GCATCTGCCC ACCCGCCTGG CCGATGCCTT CCTGGCCGGA
TCAGGCCTCG ACGCCCACCG CCCGATGCCC GACTGCCGCG ATCGCGACCT GCAACAGCTC
GCACAGCGTC TGCAGGCCTG GCCCATCACG CCCAACGGCG ACGAGGGCTG GAAAAAGGCC
GAGGTGATGG CCGGCGGCGT CGACACCCGC GACCTGAGCT CGCAGACCCT CGCCAGCCGC
CACGTGCCGG GGCTCTATTT CATCGGCGAA GCGGTCGACG TGACCGGCTG GCTGGGCGGC
TACAACTTCC AGTGGGCCTG GTCGAGCGCC TTTGCCTGCG CGCAGTCGCT GCAGCCGCAA
ATGGCGGGCG CGACCGCTTG A
|
|---|
| Protein sequence | MEHFDVVVVG AGAAGLFCAG VAGQRGLRVL LLDHAPKLAE KIRISGGGRC NFTNREAAPA
NFLSDNPHFC RSALARYGAA DFIALVRRHG IAFHEKHRGQ LFCDHSAEDI ITMLLRECEA
GAVVRRQPCR VQAVRHVADG HELDTDAGPV RTHQLVIATG GLPIPKIGAT DWGLRLAERS
GHRIVAPRPA LVPLTFDAQT WAPYAALAGL ALPVQISTGS GKQRTVFQED LLFTHRGLSG
PAVLQISSYW RPGQALSIDL THGGDLGGAL LAAKLTSKRQ LGNELAQHLP TRLADAFLAG
SGLDAHRPMP DCRDRDLQQL AQRLQAWPIT PNGDEGWKKA EVMAGGVDTR DLSSQTLASR
HVPGLYFIGE AVDVTGWLGG YNFQWAWSSA FACAQSLQPQ MAGATA
|
|---|
| |