| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1753 |
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| Symbol | |
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| ID | 6161294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1873575 |
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| End bp | 1876619 |
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| Gene Length | 3045 bp |
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| Protein Length | 1014 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641664515 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001790785 |
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| Protein GI | 171058436 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0398453 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACAC ACAACCCCTT CTGGCCGACC TGGCGCGGTC GAACCCTGAG CGCCGATCTC
GCGCTGCTGG TGCACACCGA CGCGAGTCTG GCGTCGACCC TGGATCATCT CGGCACCGTG
GCGGCGCTGG CCCGGCGGGG TCAGCGCGTG ATGCTGGCCA CACCGGCACG ACATGCCGAC
CTGCTGGCGC GCGCGCCGGG GGTCTGGGCG GTCTGGCCAC GAGCCGATGT CGATGATCCG
ATCGCCCCCC CTGGCGCGCT GACGGCCACG GTCGGTGCGC AGATCGACCT GGCGGCATTG
CCCGAACTGA TCGATCGCGC AGACGGCGAG CCCACCCGCG TTGCGCCACG CCTGCATCTG
CCCGCGACCG GGATGCAGGA CCTGCTCGAT GCCTGGGCCG CGGCCGGCTA TCAGCGCGGC
GAGCGCCTGC TGGTGGGCTG GTGCTGCACC GGCGCCAGCC ACGCCACGAT GCCGGAAATC
GCCCCGGGCG CCGCCGTCAT GCTGGCGGCA TGGTCGAGGC AGGCTGACGC CGAGCCGGCC
AGCCCGCACC TCGACCTGGG CCCCTGGCCA GGCGATCCGG CACCCGACGC CGCGACCGCC
CCTGGCTGGC TGCATTGCGC CCGCCAGATC GCCCTGCTCG ACCTGCTGCT GACCGACGAC
GCCGATGCCG CCAGCCTGGC CACCGCGCTG GGCAAGCCGG TCTGGCGGCT GGAAGACGAC
ACACCCACTT CAGCCGCCCT CGCAAGCTGG GCCCAGACAC AGATCGGCGC CTTGCACGGC
GCCCTCAGAA ACCTGCCCGG CGCCGACGCC CAGGCCGCGA TGACCGAGCT GATCGCCGCC
TGCCAGCGAG GCCACACGGC CGCCGCTCGG GCCGGCTGCG TGCAACTGCT GATCAGTCAA
CCGCAGCGCC CTGACGCCTG GCGCCTGCTC GGCCTGCTGG CCCAGCACGA CGGCGACCTG
GCGCAGGCCC GTGCACTGTT CGAACGCGTC ACCGACGTCA CGCCCGCCTA CCCGGATGGC
TGGCGCAGCC TCGCCCTGCT CTGCCTGCAG CAAGGCGAGC GCGACGCCGC GAGCCATGCG
CTGGCCCGCT ACATGACACT GGCCCCGCAC GACAGCGCCA CACGCCATCA ACTGGCGCAG
CTGTACCGCC AGGCCGGACT GCGCGAGCAA GCGATCGCAC TCTACCGGGC CGGGCTGCAG
CACCAGCCGG CCGAGATCAG CTGCCACCTC CAGCTCGGCA CGCTGCTGCT CGACGCCGAC
GAGCCCGAAG CCGCGGCGGC CCATTTCAAT CAGGTCCTCG GCGGCGTCGA TGGCGACGAC
CCACGTCACG CCGAAACACT GCGGCTGCTC GGCATGGCCG CGTCGGCACA GGGCGATGCC
GATGCGGCTG CGGCCTGCTA TCGGCAGGCG CTACCGGGCC TGCCCGTGCC GGCGAGCCTC
GACACCCGGC TCGCGCTGGC GCGGCTCTAT CAGCGCCGAG GCCAGCACGA CCGCGCCTGG
TCGCTGCTGG AACCCTGCCT GGCCAGCCAC CCCGACGACG CCTTGCTGCA ACTGGAAGCC
GCGGCGCTCA GGCGTGCTCT GTGCGATTGG TCACACACGC CCGACACCAC GGCGCTGCGC
GCGCTCGCCA CCGCTTTCGT GACCCAGTCC GAGCGAAGCA CCGAGCCGTC GACGACGCCG
ACCGCAGTCG ACAGCCATCA GCTCAGCGCG GATGCCCTCT GGCATCTCTG CAGCCAGCTC
GATGCCCGCT CGCTGGCACC CTTGCTGCAC CAAAGGCCCG CGCATCCAAC CGCCCGCACC
GCATCGGCCG GACGAGCGCC CCGCACCGCG AGCGCGCCAG ACCGCCTTCG GGTGGCGTAT
GCCGGATCGG CTGCGGCACT GCACAGTCAC GGCACGCTGC TCGCGGCGCT GCGCGACGCG
CACCGTCAAA CCAGCTTCCA GCTGCATGTC TACCGCTGGA ATGCACCGGC CGACTCGGGC
CCGTCCGGCA CCCGACCGTT TCACGATGGC GAGGGCGCGC TCGACGAGAT CGACGGCATC
GCCACTCTCC AGGGCCACAG CGACAGCCAG ATCGCCGCAC GCATTCACGC CGACCAGATC
GACATCCTGA TCGACCTCGA CGGCATCAGC CCGCACGCGC GCACCGGCAT CTGGATGCGT
CATCCGGCAG GCCTGCAACT GGCTTGGCTG AACCAGGCCG GCACGCAACT CCCGCCCGGC
TTCGACGCGC GCCTCAGCGA TCGCCACAGC GATGGCGCGC CAGCCGCCGA TCCGGGCCCG
ATCGAGCCGC CGCCAGGCAC CTCGTGGCTG CCCGACTGCC ACCGCAGCGC GATCGCCCTG
CCCGAGCTGC TGCGGCTGGG CGGCCGGTCG GTGCCGACCC GCGCCGCCCT GCGCGCGGCA
CTCGGACTGC CCGAAAAGGC GCCTGTACTG GCTTGCCTGG CGCCCCACGC CAGCATCGAC
CCGGCGACCT GGTCGTTCTG GATGCGCCTG ATGACAGCTT GCCCACCTGC CGTGCTGTGG
CTGGCACCCG GCCTTGCGGC GTCACGCAAC GCCTTGCGTC AGGCGGCGGC GGCTGCCGGT
ATCGCTGCGC AGCGCCTTCA TTTCAGGCTC GAAACGGGCC CGTCAGAACA CACCGGCACG
CTGATGGCAC TGAGTCAGGC CGATGTCTAC CTGCAAACGC CGGACGCATC ACCCTGCGTC
GACGGCAGCG ATCGCCTGCT CGATGCACTG TGCGCTGGCG TCCCGGCCCT CTGTCAAGCC
GGCGACAGCC ACCGCGCCCG CCACAGTGCC GCACTGCTGC TCGCCGCCGG CCTGCCCGAA
GGCCTGAGTG CCGACGCCGC CAGCCACCAG GCCCAGGCGA TGCGACTGCT GCGTCATCCG
CGAGAACTGC TGGCCTGGCG ACAGAAACTG AACTCGGCCC ACCACCATGC AGCCCTGTTC
CAGCCCGCAC GACTGGCCCG AAAACTCGAA GCCACCTGGC AGGAACTGTG GCAACACCGC
CGCGTGTTGA CAGGACATCT TCACAAGAGT CCGACTTCAG GCTAG
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| Protein sequence | MATHNPFWPT WRGRTLSADL ALLVHTDASL ASTLDHLGTV AALARRGQRV MLATPARHAD
LLARAPGVWA VWPRADVDDP IAPPGALTAT VGAQIDLAAL PELIDRADGE PTRVAPRLHL
PATGMQDLLD AWAAAGYQRG ERLLVGWCCT GASHATMPEI APGAAVMLAA WSRQADAEPA
SPHLDLGPWP GDPAPDAATA PGWLHCARQI ALLDLLLTDD ADAASLATAL GKPVWRLEDD
TPTSAALASW AQTQIGALHG ALRNLPGADA QAAMTELIAA CQRGHTAAAR AGCVQLLISQ
PQRPDAWRLL GLLAQHDGDL AQARALFERV TDVTPAYPDG WRSLALLCLQ QGERDAASHA
LARYMTLAPH DSATRHQLAQ LYRQAGLREQ AIALYRAGLQ HQPAEISCHL QLGTLLLDAD
EPEAAAAHFN QVLGGVDGDD PRHAETLRLL GMAASAQGDA DAAAACYRQA LPGLPVPASL
DTRLALARLY QRRGQHDRAW SLLEPCLASH PDDALLQLEA AALRRALCDW SHTPDTTALR
ALATAFVTQS ERSTEPSTTP TAVDSHQLSA DALWHLCSQL DARSLAPLLH QRPAHPTART
ASAGRAPRTA SAPDRLRVAY AGSAAALHSH GTLLAALRDA HRQTSFQLHV YRWNAPADSG
PSGTRPFHDG EGALDEIDGI ATLQGHSDSQ IAARIHADQI DILIDLDGIS PHARTGIWMR
HPAGLQLAWL NQAGTQLPPG FDARLSDRHS DGAPAADPGP IEPPPGTSWL PDCHRSAIAL
PELLRLGGRS VPTRAALRAA LGLPEKAPVL ACLAPHASID PATWSFWMRL MTACPPAVLW
LAPGLAASRN ALRQAAAAAG IAAQRLHFRL ETGPSEHTGT LMALSQADVY LQTPDASPCV
DGSDRLLDAL CAGVPALCQA GDSHRARHSA ALLLAAGLPE GLSADAASHQ AQAMRLLRHP
RELLAWRQKL NSAHHHAALF QPARLARKLE ATWQELWQHR RVLTGHLHKS PTSG
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