| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1736 |
|---|
| Symbol | |
|---|
| ID | 6161236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1853062 |
|---|
| End bp | 1854189 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641664496 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001790768 |
|---|
| Protein GI | 171058419 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0000683653 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACACTGA AGTCCTCACG GCCCACGAAG TTGCTCAACA TGCTGGTGGC CGCCATGGCG
GTTGCCGCTT CTGCCGGCGT TCACGCGCAG GAAGAAAAAG TCCTGAACAT CTACAACTGG
GCCGACTACA TCGCCGAAGA CACGATCAAG AACTTCACGA AGGAAACCGG CATCAAGGTC
CGCTACGACA ACTTCGACAG CAACGAGGCG CTGCACGCCA AGCTGGTGGC GGGCAAGTCG
GGCTACGACA TCGTGGTCCC CGGCTCGCAC TTCGCCAAGC AGCAGATCGA GGCCGGCCTG
CTGATGAAGC TCGACAAGAG CAAGCTGACC AACTACAAGA ACCTCGACCC CGCCATCCAG
GCCCAGCTGG CCAAGATGGA TCCGGGCAAC GAGCACATCG TCGACTGGCT GTGGGGCTAC
ACCACGGTGG GCATCAACAA GGAGAAGGTC GCGAAGGCGC TGGGCGACAT GCCCATGCCC
GAGAACGCCT GGGACCTGGT CTTCAAGCCC GAGTACGCCA AGAAGCTCAA GGGTTGCGGC
GTGTCGTTCC TGGACACCGC CTCCGAGATC ATCCCGATCG CGCTGAAGTA CGTGGGCAAG
GATCCTCACA GCAAGAGCGC CGACGACTAC AAGGCCGCCG CCGAGATGCT CAAGCAGATC
CGCCCGTCGG TGACGCGCTT CGCCGGCTCG GGTTCCGACT ACATCGACCA GATGGCCAGC
GGCAAGCTCT GTGCGGTGGT CGGCTGGTCG GGCGACATCC TGATCGCCAA GGACAAGTCG
GCCAAGGCCA AGAAGCCGCA GCAGCTCGAA GTGCTGCTGC CCAAGATGGG CGGCCTGCTG
TTCTTCGACA CCATGGCGAT CCCCAAGGAT GCCAAGCACC CCGACAACGC GCACAAGTTC
ATCGACTACA TCCTGCGCGC CGAGGTGCAT GCCTCGCTGA CCAACTCGGT GTTCTACGCC
AACCCGAACA AGGCCTCGCT GCAGTTCGTG GACGCGGCGA TCGCCAAGGA TCCGGCGGTG
TTCCCGAACG AGGCCGCCAT GGCGACGATG ATCCCGCCCG GCACGCCCGA CCAGGCCACG
CGCAAGCTGA TCACGCGCAC CTTCACCAAC TTCAAGGCCA ACCGCTGA
|
|---|
| Protein sequence | MTLKSSRPTK LLNMLVAAMA VAASAGVHAQ EEKVLNIYNW ADYIAEDTIK NFTKETGIKV
RYDNFDSNEA LHAKLVAGKS GYDIVVPGSH FAKQQIEAGL LMKLDKSKLT NYKNLDPAIQ
AQLAKMDPGN EHIVDWLWGY TTVGINKEKV AKALGDMPMP ENAWDLVFKP EYAKKLKGCG
VSFLDTASEI IPIALKYVGK DPHSKSADDY KAAAEMLKQI RPSVTRFAGS GSDYIDQMAS
GKLCAVVGWS GDILIAKDKS AKAKKPQQLE VLLPKMGGLL FFDTMAIPKD AKHPDNAHKF
IDYILRAEVH ASLTNSVFYA NPNKASLQFV DAAIAKDPAV FPNEAAMATM IPPGTPDQAT
RKLITRTFTN FKANR
|
|---|
| |