| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1730 |
|---|
| Symbol | |
|---|
| ID | 6161970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1846077 |
|---|
| End bp | 1847300 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641664490 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001790762 |
|---|
| Protein GI | 171058413 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.00000615882 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGAGA ACCTGCGTCG GCTCTGGTGG CTGGCCTGTC TGCTGGTGCC GCTGAGCGTG
TTGCACGTGA CGGTGTCGTG GGTCGATGCG CCGCAGCACG CCGCGCGTTC GATGGGCCTG
TCGGCCGCAC CCGACGCCCG CCTCGATGCG CAGGCCGACG GTTCGGCGGC TGCGGCCGCC
GCGGCCCGGG CCGCCAACGT GGCGCGCTGG AAGGAAGCCG TGGTGGTGGT GCACCTGGGC
ATGGCCGCGA ACCTGCTGAT CGTCAGCGCG ATGATCTGGT GGGCGCGGCG CCAGGCGCCG
CACGTGCGCG CTTTCCAGGG CGTGCTCGAA GCCTGGGGGC TGATCAGCGC GCTCGGTTTC
ACGATCGTCG TCGCCAGCAT CGATCAGTGG ATCTCGGCCG GCATCACGCC GTTCCTGATC
GGCTGCGTGC TGGTCGGTTC GCTGTTCCTG CTGCGACCGC AGCGGGCGGC CCTGTTGTAC
GGCTGCGCGT TCCTGGTCTA CGCCTGGGCG ATGGGGCTGA CGCAGGGCGA CGACGCGCGC
CTGCTGTCCA ACCGCGTCGA CGGCCTGATC GCGGCGGTGC TGGGCTTCAT GGTGAGCCTG
ATGATCTGGC GCAAGCACGT GCTCAAGGAA ACGCTGGTGT CGGAGCTGCA GGTCACCCGC
ATGGCCTTGC AGGAGCGCAG CACCGAACTG CAGTCGATGG CGGTGCGCGA CACCTTGACC
GGCTTGTGGA ACCGCGCCGA GATCATGCGG CTGGCCCAGC GCGAGCTGAC CCGCGCCCAG
CGCCACGGCG GCGAGACCTG CTTCATCATG GTCGACCTCG ACAGCTTCAA GCTCATCAAC
GACCGCTGGG GCCATGCCAC CGGGGATCGC GTGCTGGCCG CGGTGGCGAG CCTGCTGCTC
GAGGAGCTGC GCGCCACCGA CGAGGTCGGC CGCCTGGCCG GCGAGGAGTT CGCGGTGCTG
CTGCCGCAGA CCAATCTCGA GGAGGCCCGG CTGCTGGCCG AGCGCCTGCA CCTGGCGGTC
GCGCGCTTGC GCGTGCCGCT GGGCGACGCC ACCGTGCGCC TGACGGCCAG CATCGGCGCG
GCCTCGCAGA CCGGCCGCGC GCTGGTGCCG GTGCCGCAGC AGTTCGAGCG GCTGTTCGGC
TCGGCCGAGC AGGCGCTGTC GTCGGCCAAG TCGCAGGGGC GTGACCGCGT GGTGGTCGCC
CCGCCGATGG CGCCACTGGT CTGA
|
|---|
| Protein sequence | MLENLRRLWW LACLLVPLSV LHVTVSWVDA PQHAARSMGL SAAPDARLDA QADGSAAAAA
AARAANVARW KEAVVVVHLG MAANLLIVSA MIWWARRQAP HVRAFQGVLE AWGLISALGF
TIVVASIDQW ISAGITPFLI GCVLVGSLFL LRPQRAALLY GCAFLVYAWA MGLTQGDDAR
LLSNRVDGLI AAVLGFMVSL MIWRKHVLKE TLVSELQVTR MALQERSTEL QSMAVRDTLT
GLWNRAEIMR LAQRELTRAQ RHGGETCFIM VDLDSFKLIN DRWGHATGDR VLAAVASLLL
EELRATDEVG RLAGEEFAVL LPQTNLEEAR LLAERLHLAV ARLRVPLGDA TVRLTASIGA
ASQTGRALVP VPQQFERLFG SAEQALSSAK SQGRDRVVVA PPMAPLV
|
|---|
| |