| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1711 |
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| Symbol | |
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| ID | 6162236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1828773 |
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| End bp | 1829882 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641664471 |
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| Product | hypothetical protein |
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| Protein accession | YP_001790743 |
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| Protein GI | 171058394 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0767] ABC-type transport system involved in resistance to organic solvents, permease component |
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| TIGRFAM ID | [TIGR00056] conserved hypothetical integral membrane protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00000000795041 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGTGTCG ACTTGAACGG CCACGAGTGG CGCCAGGACG GCGCCGGCTG GACGCTGATC
CTGCGCGGCG ACTGGTGCGG TGACGCCGGC ACCCGGCTCA CGCCGCCCCC CGCGGCGGCG
CGGCAGGTCA GCGTCGACGC CCGTGCGCTC GGCGCCTGGG ACGGTGGCCT GGCCGCCGCG
CTGCACCAGT GCCTGGCACC GCTGCACCAG CGCGCCGTGC CGCTGCAGCT GCAGGACTTG
CCGCCGGGCG TTCGCAGCGT GCTGGAGCTG GCGCTGTCGG TGGTGCGGGT GTCGGCGCCC
GAGCGTGCGG CCGCGCCGGT CGGGGTGGCC GCGATCGGCC ACCGGCTGGC GATTTCGTGG
GTCGAATGCA TGGCCACGGC GGCGTTTTTC GGCGAGGTGC TGATCGCGCT GGGCCGGCTG
CTGCGCGGGC GCAGCGACCT GCAGGGTGTC GACCTGTGGC GCCAGGTCGA CCAGGCCGGG
CCGCTGAGCG TGCCGATCGT CTCGCTGACC TGTTTCCTGG TCGGCCTGAT GCTGGCCTAC
ATGGGCGGCG CCCAGCTGCA CCGCATCGGC GCGCCGTCCT TCATCCCCGA CGTGGTGACA
GTGGGCATGG TGCGCGAGCT CGCCGGGCTG ATGACCGGCG TGATCCTGGC CGGCCGGCTG
GGCGCGGCGT TTGCGGCCCA GATCGGCAGC ATGCAGGCCG GCGAGGAGAT CGACGCGCTG
CGCGCCCTGG GCGTCGACCC GATCGGCTAC CTGGTGCTGC CGCGCCTGCT GGCGCTGCTG
CTGGTGGCGC CGATGCTGGT GGCCATCGGC ATGCTGGTGG GCGTGCTGGC CGGTCTGCCC
GCGGCGGTGG CGGCCTATGG CCTGTCGCCG ACCGAGTACC TGCACAAGAG CGCCGCCGCG
CTGACCTGGA CCCACCTGTG GATCGGCCTC TTCAAGGGCA TGATGTACCT CGGCCTGGTG
GCGCTGGCGG GCTGCCGCGA GGGCCTGCGT GCCGGCCGCG ACGCCCAGGC CGTGGGTGCG
GCCACCACCA CTGCGGTGGT CAAGGCGCTG GTCTGGATCG TGGCGGCGGC CTGCGGCTCG
ACCGTCGTGC TGCAGAGCCT GGGCTTCTAG
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| Protein sequence | MGVDLNGHEW RQDGAGWTLI LRGDWCGDAG TRLTPPPAAA RQVSVDARAL GAWDGGLAAA
LHQCLAPLHQ RAVPLQLQDL PPGVRSVLEL ALSVVRVSAP ERAAAPVGVA AIGHRLAISW
VECMATAAFF GEVLIALGRL LRGRSDLQGV DLWRQVDQAG PLSVPIVSLT CFLVGLMLAY
MGGAQLHRIG APSFIPDVVT VGMVRELAGL MTGVILAGRL GAAFAAQIGS MQAGEEIDAL
RALGVDPIGY LVLPRLLALL LVAPMLVAIG MLVGVLAGLP AAVAAYGLSP TEYLHKSAAA
LTWTHLWIGL FKGMMYLGLV ALAGCREGLR AGRDAQAVGA ATTTAVVKAL VWIVAAACGS
TVVLQSLGF
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