| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1705 |
|---|
| Symbol | |
|---|
| ID | 6162649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1822594 |
|---|
| End bp | 1823511 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641664465 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001790737 |
|---|
| Protein GI | 171058388 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2962] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00000102674 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTGA GCCATTCCCG CGCCGTCCTG GTGATGCTGC TGGTCACGCT GCTGTGGAGC
ATCGCCGGCG TGGTGTCGCG CCACCTCGAG GCGGCCCGTT CGTTCGAGGT CACGTTCTGG
CGCAGCGCCG CCTGTGCGCT GGCGCTGCTG GTGATCCTGG CCCGGCAGCG CGGCGGCCTG
CGCGCGCTCT GGCGTGGCAT CGGCGAGGGC GGCGCGCTGA TGTGGTGGTC CGGCCTGTGC
TGGAGCGTCA TGTTCACCGC CTTCATGATG GCGCTCACGC TCACCACCGT GGCCAACGTG
CTGATCACGA TGGCGCTGGC ACCGCTGTTC ACCGCGCTGA TCTCGCGGGT CTGGCTCGGC
CACCGGCTGG CGCCGCGCAC CTGGGTGGCG ATCGTGGTGG CCGGTGCGGG CATCGCCTGG
ATGTTCGGCT CGCAGTTGAG CGGCGAAGGC GCGCCGCTGC TGGGCACGCT GGTGGCGCTG
ACGGTGCCGA TCGGCGGCGC CATCATGTGG ACGCTGGCCC AGCACAACGT GCGCCAGCAT
CCCGACCAGC GCGCCGACAT GCTGCTGGCG GTGCTGATCG GTGCCGTCAT TTCGTCGCTG
CTGACGCTGC CGCCGGCCTG GCCGCTGCAG GGCACGCTGC GCGACATCGG TCTGCTGTCG
ATGCTGGGCG TGGTTCAGCT GGCGATTCCC TGCCTGCTGG CGGTGGCCGC CGGCAAGGTG
CTCAAGGCGC CCGAGGCCTC GCTGCTCGGC CTGCTCGAGA TCATCTTCGG CGTCACCTGG
ACCTGGCTGG GCACCGCCGA GTCGCCCACG CCGGCGGTGC TGGGCGGTGG CGCGCTGGTG
ATCGGTGCAC TGGCCGCCAA CGAGGCGCTG GCCTTGTTCG GCAGCCGCCG ACTGGCCGCG
GCAACCGGTC CGGCCTGA
|
|---|
| Protein sequence | MKLSHSRAVL VMLLVTLLWS IAGVVSRHLE AARSFEVTFW RSAACALALL VILARQRGGL
RALWRGIGEG GALMWWSGLC WSVMFTAFMM ALTLTTVANV LITMALAPLF TALISRVWLG
HRLAPRTWVA IVVAGAGIAW MFGSQLSGEG APLLGTLVAL TVPIGGAIMW TLAQHNVRQH
PDQRADMLLA VLIGAVISSL LTLPPAWPLQ GTLRDIGLLS MLGVVQLAIP CLLAVAAGKV
LKAPEASLLG LLEIIFGVTW TWLGTAESPT PAVLGGGALV IGALAANEAL ALFGSRRLAA
ATGPA
|
|---|
| |