Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1704 |
Symbol | |
ID | 6162648 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1820684 |
End bp | 1822504 |
Gene Length | 1821 bp |
Protein Length | 606 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641664464 |
Product | GTP-binding protein TypA |
Protein accession | YP_001790736 |
Protein GI | 171058387 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR01394] GTP-binding protein TypA/BipA |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0000025376 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCAAGC AAATCCGCAA CATCGCCATC ATCGCCCACG TCGACCATGG CAAGACCACC ATGGTGGACC AACTCCTGCG TCAGAGCGGC ACCTTCGCCG AGCACGAGAA GGTCGTCGAC ACCGTGATGG ACAGCAACGC CATCGAACGC GAGCGTGGCA TCACCATCCT GGCCAAGAAC TGCGCCGTGA GCTGGGAAGG CACGCACATC AACATCGTCG ACACCCCCGG ACACGCCGAC TTCGGCGGCG AGGTCGAGCG CGCGCTGTCG ATGGTCGACG GCGTGGTGCT GCTGATCGAT GCGCAGGAAG GCCCGATGCC CCAGACCCGC TTCGTGACCA AGAAGGCGCT CGCCCTCGGT CTGAAGCCGA TCGTGGTGGT CAACAAGGTC GACAAGCCGG GTGCCAAGCC CGACTTCGTC GTCAACGCCG CTTTCGACCT GTTCGACAAG CTCGGCGCCA CCGACGAGCA GCTCGACTTC CCCGTCGTCT ACGCCTCGGG CATCAACGGC TGGTCGTCGC TCGAAGAAGG TGCGCCCGGC GAGAAGTGGG GCGAGGACAT GTCCGCCCTG TTCAACACCG TGCTCAAGCA CGTGCAGCCG CACGCCGGTG ACGCCGCCGC GCCGCTGCAG CTGCAGATCT CCGCGCTCGA CTACTCGACC TTCGTCGGCC GCATCGGCGT GGGCCGCATC AACGCCGGCA CCATCAAGCC GGGCATGGAC GTGCTGGTCT GCGAAGGCAC CGACGGCAAG ACCGTCAAGG GCCGCGTCAA CCAGGTGCTG ACCTTCCAGG GCCTGGACCG CGTGCAGGTG ACCGAAGCCG GCCCGGGCGA CATCGTGCTG ATCAACGGCA TCGACGCGCT GGGCATCGGC GTGACCGTGA CCGACCCGCA GAACCCGGCA CCGCTGCCGA TGCTCAAGGT CGACGAGCCG ACGCTGACGA TGAACTTCTG CGTCAACACC AGCCCGCTGG CCGGCCGCGA AGGCAAGTAC GTCACCAGCC GCCAGATCTG GGACCGCCTG CAGAAGGAGC TGCAATCGAA CGTGGCGCTG CGCGTCTCGG AAACCAGCGA AGACGGCATC TTCGAGGTGA TGGGCCGCGG TGAACTCCAC CTGACGATCC TGATCGAGAA CATGCGCCGC GAAGGCTACG AGCTGGCCGT GTCCAAGCCG CGCGTGGTGT TCCACGACGT CAACGGCGAG AAGCACGAGC CGATCGAACT GGTCACCGCC GACGTCGAAG AGACCCACCA GGGCGGCGTG ATGCAGGCGC TGGGCGAGCG CAAGGGCGAA CTGGTCAACA TGGAGCCGGA CGGCCGTGGC CGCGTGCGCC TCGAGTACCG CATCCCGGCG CGGGGCCTGA TCGGTTTTTC CAACGAGTTC ATGAACCTGA CGCGGGGTTC GGGCCTGATC TCGAACATCT TCGAAGGCTA CGAGCCGCAC AAGGGCGAGA TCGCCGGCCG CAAGAACGGC GTGCTGATCT CGATGGACGC CGGCGAGATC TTCACCTACG CGCTGGGCAA GCTCGACGAC CGCGGCCGCA TGTTCGTCAA GCCGAACGAT CCGGTGTACG AGGGCATGAT CGTCGGCATC CACAGCCGCG ACAACGACCT GGTCGTCAAC GCCACCCGCA CCAAGCAGCT GACCAACTTC CGCGTCAGCG GCAAGGAAGA CGCGATCAAG ATCACGCCGC CGATCGACCT GACGCTCGAA TACGGCGTCG AGTTCATCGA GGACGACGAG CTGGTCGAGA TCACGCCCAA GTCGGTGCGT CTGCGCAAGC GGTTCCTGAC CGAAAACGAA CGCAAGCGCG CGGGGCGCTG A
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Protein sequence | MTKQIRNIAI IAHVDHGKTT MVDQLLRQSG TFAEHEKVVD TVMDSNAIER ERGITILAKN CAVSWEGTHI NIVDTPGHAD FGGEVERALS MVDGVVLLID AQEGPMPQTR FVTKKALALG LKPIVVVNKV DKPGAKPDFV VNAAFDLFDK LGATDEQLDF PVVYASGING WSSLEEGAPG EKWGEDMSAL FNTVLKHVQP HAGDAAAPLQ LQISALDYST FVGRIGVGRI NAGTIKPGMD VLVCEGTDGK TVKGRVNQVL TFQGLDRVQV TEAGPGDIVL INGIDALGIG VTVTDPQNPA PLPMLKVDEP TLTMNFCVNT SPLAGREGKY VTSRQIWDRL QKELQSNVAL RVSETSEDGI FEVMGRGELH LTILIENMRR EGYELAVSKP RVVFHDVNGE KHEPIELVTA DVEETHQGGV MQALGERKGE LVNMEPDGRG RVRLEYRIPA RGLIGFSNEF MNLTRGSGLI SNIFEGYEPH KGEIAGRKNG VLISMDAGEI FTYALGKLDD RGRMFVKPND PVYEGMIVGI HSRDNDLVVN ATRTKQLTNF RVSGKEDAIK ITPPIDLTLE YGVEFIEDDE LVEITPKSVR LRKRFLTENE RKRAGR
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