Gene Lcho_1633 details

Gene Information

• Locus tag: Lcho_1633
• ID: 6163455
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1735321
• End bp: 1737231
• Gene Length: 1911 bp
• Protein Length: 636 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641664387
• Product: putative signal transduction histidine kinase
• Protein accession: YP_001790665
• Protein GI: 171058316
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4585] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 28
• Fosmid unclonability p-value: 0.0985206
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGGCGGC GCATCCGGGG CGGCTTCGAT GGGCTGCTCG TCGCCGTGCT GTGGCTGCTG 
GCGCCGTTGG CGCTGGCACA GTCTTCGCCA CCGGCTGCGC GCCTGACACA GGCCTGGTTC 
GCGAGCGCGG ACACACCCGA GCCGCCACCG CGGGGCGATG CGCGCTGGCA GCCGGTCGAG 
CTGCCACATG TCTGGAGCAT GGCCGAGCAG GAGGGCCGCG GCGGCTGGTA TCGGCTGGCC 
TGGCGTGATC CGGCGGCGCG CACGCAAACC GCCGCGCTGC CGTGGTCGGT CTATCTGCCG 
CAGGTGCACG TGAATGCCGC GCTCTGGCTC GACGGCCTGC CGCTGGGCGA CGGCGGCCGG 
CTCGATGATC CGATGGCCTT CCACTGGAAC CATCCGATGC TGTTTCGCCT GCCGCCGGCG 
GTTGCGGCCG GCGCCGAACA TGACTTGCTG ATCCGCGTGC GTGTAGCCGG TGGCTTCGGC 
CTGCTCGCGC CGGTGGAGAT CGGGCCCGAC GCGGCGCTGC GGGCGCGCCA TGACCTGCGC 
CGTTTCTGGC AGGCCGAGGT GCACGGCGTG CTGGCGCTGC TGCTGCTGTC GATCGCCGCG 
CTGTCGCTGG CGATCTGGGG CCAGCGACGC CAGGACACGC AGTATCTGTG GCTGGCCGTC 
TCGTGCATGG CCTGGGCGGT GTTCGCGGTG TTCCTGTACG GGCGCGAGTT CTGGATCGAT 
CCGCTGTGGA TGCAGTGGCT GGCGCAGAAC GGCACCGTCT GGTGGGTGAC CGGCCTGGCG 
CATTACGTGC ACCGATTGAC CGGTGGGCCG CGGCGACGCA TCGAGCGCGT GGTGGTGGGC 
GTTTCGCTGC TGTTGGGCGT GGCGGCGCTG CTGCTCGATC CGCTCTCGCG GGTGCATGTC 
TACAGCCTGG GCCACGTGTT CGCGCTGATC ACGGTGGGCT ACCTGCTGGT CCATACGCTG 
CGCCATGCCC GGCGCACCGG CGCCGGCAGC GCCTACGGCC TGGCGCTGGC CTGTGCGGTG 
GTGCTGCTGG CGGGAGTGCA CGACGTCGTG CTGACGATGC CGGTGGCCTG GTCGTCGATG 
GCGCTGGTGC GCCAGCTGCA GGACTGGCGT TTCTACCTGA CCCCCTTCGG CGCGCCGCTG 
GCTTCGGTGC TGCTGGCGTT CTTCCTGGCG CGGCGCTTCG TCTCGACGCT GGCGCAGTTC 
GAGGGCCTCA ACGCCCAGCT CGAGCGCCGT GTCGAGGACA GCCGCCAGGC GCTCGACCGC 
CAGTACGAAG CCCGCCGCCA GCTCGAGCGC GCGCAGGCCG CGGCCGAGGA GCGCGAACGC 
ATCGTGCGCG AGATGCACGA CGGCATCGGC GGCCACCTCA TGACCGCGCT GCGCGGTGTC 
GAGCGCGGGG CCTTCAGCCA GGACCGCCTG ACCGAGCTGC TGCAGGACAG CCTCGACGAC 
CTGCGCCTGA TCATCGACGC CAGCTCGGCC AGCACCGCGC TGCAGCCGGC GCTGGCGGCC 
TGGCGCAGCC GCTGGGACCC GCGCCTGGAG GCGCTCGGCG TGGCGCTGAA CTGGCATGTC 
GACGAGGCCG TCGCCCAGGT CGAACTCGCG CCCGACGTCG TGCTGCAGCT CATGCGCATC 
CTGCAGGAGG CGGTGACCAA CACCCTCAAG CACGCCCAGG CGAGCGAGGT CGACATTCAC 
ACGCGCCTGC AGGACGCCGA GCTGCAGCTG GTGATCCGCG ACAACGGCCG GGGTGCGCTC 
GGGCCGGGTC TGCCGACCTT CGCGCCCGCC GGCGCCGGGG CCGGGCAGCA TGGCTTGCGC 
TCGATGCACA ACCGTGCCGC CGCGATCGGT GCGCGCCTGG AGTGGTGCGC GGCGGTGGGC 
GGGGGCACGC AGGTGCTGCT GCGCCTGGGC GCGCCGACGC GGCCGGCCTA G 

 

Protein sequence

MRRRIRGGFD GLLVAVLWLL APLALAQSSP PAARLTQAWF ASADTPEPPP RGDARWQPVE 
LPHVWSMAEQ EGRGGWYRLA WRDPAARTQT AALPWSVYLP QVHVNAALWL DGLPLGDGGR 
LDDPMAFHWN HPMLFRLPPA VAAGAEHDLL IRVRVAGGFG LLAPVEIGPD AALRARHDLR 
RFWQAEVHGV LALLLLSIAA LSLAIWGQRR QDTQYLWLAV SCMAWAVFAV FLYGREFWID 
PLWMQWLAQN GTVWWVTGLA HYVHRLTGGP RRRIERVVVG VSLLLGVAAL LLDPLSRVHV 
YSLGHVFALI TVGYLLVHTL RHARRTGAGS AYGLALACAV VLLAGVHDVV LTMPVAWSSM 
ALVRQLQDWR FYLTPFGAPL ASVLLAFFLA RRFVSTLAQF EGLNAQLERR VEDSRQALDR 
QYEARRQLER AQAAAEERER IVREMHDGIG GHLMTALRGV ERGAFSQDRL TELLQDSLDD 
LRLIIDASSA STALQPALAA WRSRWDPRLE ALGVALNWHV DEAVAQVELA PDVVLQLMRI 
LQEAVTNTLK HAQASEVDIH TRLQDAELQL VIRDNGRGAL GPGLPTFAPA GAGAGQHGLR 
SMHNRAAAIG ARLEWCAAVG GGTQVLLRLG APTRPA