| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1583 |
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| Symbol | |
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| ID | 6163002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1681977 |
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| End bp | 1682747 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641664337 |
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| Product | ABC-2 type transporter |
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| Protein accession | YP_001790615 |
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| Protein GI | 171058266 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0567734 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGCG TCAGCCTGGC GGGTGCGCGC ACCCTGTTCT ACAAGGAAGT GCTGCGCTTC
TGGAAGGTCA GCTTCCAGAC CGTGGCCGCC CCGGTGCTGA CCGCGGTGCT GTACCTGATG
ATCTTCGGCC ACGTGCTCGA AGACCACGTC AAGGTCTACG ACTCGGTCGG CTACACCGCC
TTCCTGATCC CCGGCCTGGT GATGATGAGC GTGCTGCAGA ACGCCTTCGC CAACAGCTCG
TCGAGCCTGA TCCAGAGCAA GATCACCGGC AACCTGGTGC TGCTGCTGGT CACGCCGCTG
AGCCACCGGG CCTGGTTCCT GGCGTATGTC GGCGCCTCGA TGGTGCGCGG GCTGGTGGTC
GGCTCGGGCG TGCTGGCGGT GACGGTGTGG TTCGCGCCGC CCGGGCTGGC GCAGCCGCTG
TGGGCGCTGG TGTTCGCGCT GCTGGGCGCG GCGCTGATGG GCAGCCTGGG CCTGATCGCC
GGCCTGTGGG CCGAGAAGTT CGACCAGCTG GCCGGTTTCC AGAACTTCAT CGTCATGCCC
ATGACCTTTC TGGCGGGTGT CTTCTATTCG ATCCACTCGC TGCCCGCGGT CTGGCAGACG
GTCAGCCACG TCAACCCGTT CTTCTACATG ATCGACGGCT TCCGCTTCGG CTTCTTCGGC
GTCAGCGACG TCTCGCCGTG GCTGAGCCTG GCGGTGGTGT CGGGCAGCCT GCTGGTGGTG
AGCGCCGCCA CGCTGCGCCT GCTGGCCAGC GGCTACAAGC TGCGGCACTG A
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| Protein sequence | MSRVSLAGAR TLFYKEVLRF WKVSFQTVAA PVLTAVLYLM IFGHVLEDHV KVYDSVGYTA
FLIPGLVMMS VLQNAFANSS SSLIQSKITG NLVLLLVTPL SHRAWFLAYV GASMVRGLVV
GSGVLAVTVW FAPPGLAQPL WALVFALLGA ALMGSLGLIA GLWAEKFDQL AGFQNFIVMP
MTFLAGVFYS IHSLPAVWQT VSHVNPFFYM IDGFRFGFFG VSDVSPWLSL AVVSGSLLVV
SAATLRLLAS GYKLRH
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