| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1569 |
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| Symbol | |
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| ID | 6163381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1667315 |
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| End bp | 1669618 |
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| Gene Length | 2304 bp |
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| Protein Length | 767 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664323 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001790601 |
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| Protein GI | 171058252 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.428413 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCAA ACCCGCGTCC TGATTCGTCC GTTTCCTCTC CTTCGACCTG GGTCGGCGGC
CTGCTGCCGC TGGGCGCGCT GGCCTGTGGC CTGGGCCTGC CCGGCTGGGC CGCGGCGCAG
ACCGAAGCCG CCGCCGAGGC GGTGGCGCTG CCCAAGATCA CCGTCACTGC GCCGGCCCTG
CCCGAGCAGG GCAAGGACAG CGTGCAGGCC GTGCGCACCC GCATCGGCCG CGGCGAGCAG
GCGCTGCGCG ACATCCCGCA GTCGGTCACG GTGGTGACCG AGCGGCTGAT CGACGACCGC
AACCTCGACA CCTTCAAGGA CACCCTCAAG AACACCGCCG GCATCACCTT CCTGGCCGCC
GAGGGCGGCG AAGAGGACAT CCGCCTGCGC GGCTTCTCGC TGCAGGCCAC CGGCGACATC
TTCATCGACG GCATGCGCGA TCCGGCCTTC TACGACCGCG ACTCGTTCAA CTGGGACCGG
CTCGAGCTGC TGCGCGGTTC GGCCTCGATG CTGTTCGGCC GCGGCTCGAC CGGCGGCGCG
GCCAACCAGG TCAGCAAGCA GCCCTTCCTG ATGGACGGCC ACGAGGTCAA CCTCACGCTC
GGCAGCCACC GGCACCGGCG CCTGACGGGC GACTTCAATA TCAAGACCGG CGACGACGCG
GCGCTGCGCA TCAACGCGAT GGCCACCCAG GCCGACAACA ACGGCGCCGG CAGCGCCATC
GACAAGCAGG GCATCGCCGG CACCTACCGC TGGGGCATCG GCACCAGCGA CGAGTTCTCG
CTCGGCCTGT TCCACCTGAA CAATCAGAAC GGCATCAACT ACGGCCTGCC GTGGATCCGC
CCGACCGCCA GCGCGCCGGC CAGCTCGGCC GGCATGATCA CCACGCTGGA TCCGAGCGCC
TACTACGGCA TGGCGAGCGA CCAGAGCCAC GGCAGCGCCA GCACCGCCAC GCTGGCCCAC
ACCCACCGCT TCGACGCCGA TGCCTCGCTC AAGACCACAG TGCGGCGCGG TGCCTTCAAG
CGGGACCAGC GCGCCAGCAC GGTGCGCCTG TGCACGCAGA CGACCAACGC CACCACCGGC
GTGGTCACCA ACCCGCAGTG CCCGACGACG CAGGTGGCGC TCGACACCCT GAGCGACGCC
ACGATCCTGA CGCGCGGTGC GCAGCTGAAG ATCCAGGACC TCGACACCCT GCACGCGCAG
TCGGACCTCA GCGCGCGCTT CGATGCGCTG GGCCTGCGGC ACGAGGTGCA GGCCGGCGCC
GACTGGGCGC GCGAGGAGAA GATCGTCTAC CGCGCCACCA CGCCCACCGG CGTGAACCTG
GCCAAGCCGA CCACCACCAT CGGCACGCCC GACGACGGCG CGTCGATCGA CGAAGGCCAG
CGCGTGCTGA GCAAGGCCAG CGGTTTCGTC AACCAGGCCT GGGGCGTCTA CGCACAGGAT
CTGCTGACGG TGGCGCCGGG CTGGAAGCTG CTCGGCGGCC TGCGCTACGA CCGGATGGAC
GGCCAGTTCG AGCAGATCGC CACCACCGGC GTGGTCACGC CCTACCGCCA ACAGATCGGC
GAGTTCAGCC AGCGCCTGGG CGCGCTGTGG CAGCCGAGCC CGACGCAGTC GTACCACGCC
TCCTGGGGCA GCTCGTTCAA CACCTCGGGC GACTCGTATT CGTACAACGC GCAGAGCGCC
AACACCGACC CCGAGCAGAG CGTCAACATC GAGCTCGGCG CCAAGCTCGA CAGCGACGAC
CGGCTGTTCT CGACCCGCGT GGCGCTGTTC CATTCGGTCA AGAAGAACGA GCGCAACACC
GACCCGGACA CCGCGGCGAC CGCCTTGCTG CTCTCGGGCA AGCGTCACGC CAGCGGCGTC
GACATCGACT TCACCGGCAT GCTGACGCGC CAGTGGGAGG TCTACGTGTC GTACATGTGG
ATCCCGGATG CCCGCGTCGA CGTCGCCGCG CCGACTGCCG CCACCTTCGG CAACCGCCAG
GGCGATCGCC CGGGCCTGAC GCCGCGCCAC AGCGGCACGG TCTGGAACAC CTTCCAGCTG
AGCCCGAAAT GGCGTGTCGG TGGCGGCCTG AACTTCCGCA GCGAGAGCAC GCCGGCCGAC
CAGCAGGCCG CCAACGCGGT CACTTCGCCG GGTTACGTGA CGGGTGACCT GATGGCCGAG
TACGCCTTCG ATCCGCAGCG TTTCATCGTC AAGGCCAACC TGAGCAACGT CACCAACAAG
CTCTATGGCG AAGGCCTCTA CCGCGGTCAC TACATCCCGG GCGCCGGCCG GGTGCTGGCG
GTGACGGGCA CGCTGAAGTT CTGA
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| Protein sequence | MAANPRPDSS VSSPSTWVGG LLPLGALACG LGLPGWAAAQ TEAAAEAVAL PKITVTAPAL
PEQGKDSVQA VRTRIGRGEQ ALRDIPQSVT VVTERLIDDR NLDTFKDTLK NTAGITFLAA
EGGEEDIRLR GFSLQATGDI FIDGMRDPAF YDRDSFNWDR LELLRGSASM LFGRGSTGGA
ANQVSKQPFL MDGHEVNLTL GSHRHRRLTG DFNIKTGDDA ALRINAMATQ ADNNGAGSAI
DKQGIAGTYR WGIGTSDEFS LGLFHLNNQN GINYGLPWIR PTASAPASSA GMITTLDPSA
YYGMASDQSH GSASTATLAH THRFDADASL KTTVRRGAFK RDQRASTVRL CTQTTNATTG
VVTNPQCPTT QVALDTLSDA TILTRGAQLK IQDLDTLHAQ SDLSARFDAL GLRHEVQAGA
DWAREEKIVY RATTPTGVNL AKPTTTIGTP DDGASIDEGQ RVLSKASGFV NQAWGVYAQD
LLTVAPGWKL LGGLRYDRMD GQFEQIATTG VVTPYRQQIG EFSQRLGALW QPSPTQSYHA
SWGSSFNTSG DSYSYNAQSA NTDPEQSVNI ELGAKLDSDD RLFSTRVALF HSVKKNERNT
DPDTAATALL LSGKRHASGV DIDFTGMLTR QWEVYVSYMW IPDARVDVAA PTAATFGNRQ
GDRPGLTPRH SGTVWNTFQL SPKWRVGGGL NFRSESTPAD QQAANAVTSP GYVTGDLMAE
YAFDPQRFIV KANLSNVTNK LYGEGLYRGH YIPGAGRVLA VTGTLKF
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