Gene Lcho_1554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1554 
Symbol 
ID6163627 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1648884 
End bp1649609 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content72% 
IMG OID641664309 
Productesterase YpfH 
Protein accessionYP_001790587 
Protein GI171058238 
COG category[R] General function prediction only 
COG ID[COG0400] Predicted esterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.694816 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAAGA CCTACATCGA ACTGCTGCCC GAAGAGGGCG AACCCCAGCA ACTGATGCTG 
CTGCTGCACG GCGTGGGCGC CAATGCGCAG AACCTGCTGC CGCTGGGGCG GGTGCTGCGC 
GCGCACTTTC CGCAGGCCGT GATCGTGGCA CTGCAGGGTT ATGACGCGCT CGACGGCACG 
CCGTCGGGCA ACAGTGCGGC GCGGCAATGG TTTTCAGTGC GCGGGGCGGT CGAGGCCGAA 
CGCCCGGCCC GCGTGGCCGC GGTGCTGCCG CGCCTGATCG GCGATGTGCG CGCCCATCAG 
CAGCGCCTGG GCATCGGCGA GGCGGCGACG GCGCTGATCG GGTTTTCGCA GGGCGCGATC 
CTGTCGCTCG AGGCGGTGGC GGCCGAGGAC GGCCTGGCCG GCCGGGTGCT GTCCTTCAGC 
GGGCGCTACG CCACGCTGCC GGCACAGGCG CCGCAGCGCA CCACGCTGCA CCTGTTCCAC 
GGCGCCACCG ATGCGGTGAT CCCGGCCGTG CACTCGCGCT ATGCGATCGA GCACCTGGCC 
GGGCTCGACG GCAGCGACGC CACGCTCGAC ATCGCCGACG GCGTCGGCCA CGAACTGCAC 
GCCAGCCTGG TCGAGTGCGC CCTGCTGCGG CTGACCAAGC ACATCCCGAT GCGGCTGTGG 
AAGGCCGCGC TCGGCGGCGC GTCGGCGGCG GCTTCGCCGC ATGTCGAGGG CGGCAGCCTG 
CAGTGA
 
Protein sequence
MDKTYIELLP EEGEPQQLML LLHGVGANAQ NLLPLGRVLR AHFPQAVIVA LQGYDALDGT 
PSGNSAARQW FSVRGAVEAE RPARVAAVLP RLIGDVRAHQ QRLGIGEAAT ALIGFSQGAI 
LSLEAVAAED GLAGRVLSFS GRYATLPAQA PQRTTLHLFH GATDAVIPAV HSRYAIEHLA 
GLDGSDATLD IADGVGHELH ASLVECALLR LTKHIPMRLW KAALGGASAA ASPHVEGGSL 
Q