Gene Lcho_1481 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1481 
Symbol 
ID6162016 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1563076 
End bp1564278 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content67% 
IMG OID641664235 
Productperiplasmic copper-binding 
Protein accessionYP_001790514 
Protein GI171058165 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3420] Nitrous oxidase accessory protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.194727 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGCCCCG GCGACGCCCT GCAGCCGGTG ATCGACCGCG CCGCCGCCGG CGACGTGATC 
GAGCTGCAGC GCGGCCTCTA CACCGCCAAC CTGCTGATCG CCAAGCCGCT GACGCTGCGT
GGCATCGGCA AGCCGACGAT CAGCGGCGGC CTGCAGGGCG ACACGATCCG CGTCACCGCC
ACCGACGTCA CCATCGAGGG CCTGATCGTG CGCGACTCGG GCGACAGCCT GAAGGACCAG
AACGCCGGCA TCTACATCCG CCCGGGCGCA CACCGCGCCG TGATCCGCCA CAACGACCTG
GCCTACAACC TGTTCGGTCT GTGGATCGAG AAGGCCGACG ACGTGCGGGT GGAGCACAAC
CTGATCACCG GCAAGCGCGA GTACGGCAGC TCGCAGCGTG GCAACGGCGT GCAGCTCTAC
AACACCCAGG GCGCGCGCAT CATCGGCAAC CACATCAGCT TCGTGCGTGA TGCGCTCTAC
GTGGACGTCT CGCACGACGC GATCTTCCGG GGCAACCGGC TGCACCACAG CCGCTACGGC
ACCCACTACA TGAACTCGTA TCGCAACCTC TGGGAAGACA ACGACACGTA CGCCAACCGC
GGCGGCCTGG CGTTGATGGA GGTGCGCGAC CAGGTGGTGC GCAACAACCG CGCCTGGGGC
AACACCGACC ACGGCATCAT GCTGCGCACG CTGCAGGACT CGGTGATCGA GAACAACGTG
GTGATGGGCA ACGCACGCGG CTTCTTCATC TACGACGTCG AATACGCCAC GCTGCGCGGC
AACCTGGTGC TCGACAACGA CGTCGGCGTG CACCTGTCGG CCGGCTCGAC GCGCAACCGC
GTCGACGGCA ACGACTTCAT CGGCAACCGC GAGCAGGTCA AGTACGTCGG CTCGCGCGAC
GAACGCTGGG GCGGCGAACA CGGCAACCAC TGGGGCAACT ACCTCGGCTG GGACCGCAAC
GGCGACGCAC GCGGCGACGT GCCCTACGAG GCCAACGACA TGGTCGACCG TCTGAGCTGG
CAGCACCCGA TGATGAAGCT GCTGCTCGCC AGCCCGGCCG TTCAGGCGCT GCGCCTGGTC
GGCCAGCAGT TCCCGGTGCT GCGCGTTCCC AGCGTGATCG AAGCCCGCCC GCGCATGCAG
CCGGTGCAGC CGCAATGGCC GGCCTGGCGT CAGAAATTGA AGGATCACCC CGATGCGCGC
TGA
 
Protein sequence
MRPGDALQPV IDRAAAGDVI ELQRGLYTAN LLIAKPLTLR GIGKPTISGG LQGDTIRVTA 
TDVTIEGLIV RDSGDSLKDQ NAGIYIRPGA HRAVIRHNDL AYNLFGLWIE KADDVRVEHN
LITGKREYGS SQRGNGVQLY NTQGARIIGN HISFVRDALY VDVSHDAIFR GNRLHHSRYG
THYMNSYRNL WEDNDTYANR GGLALMEVRD QVVRNNRAWG NTDHGIMLRT LQDSVIENNV
VMGNARGFFI YDVEYATLRG NLVLDNDVGV HLSAGSTRNR VDGNDFIGNR EQVKYVGSRD
ERWGGEHGNH WGNYLGWDRN GDARGDVPYE ANDMVDRLSW QHPMMKLLLA SPAVQALRLV
GQQFPVLRVP SVIEARPRMQ PVQPQWPAWR QKLKDHPDAR