Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1479 |
Symbol | |
ID | 6162014 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1561255 |
End bp | 1562070 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641664233 |
Product | ABC-2 type transporter |
Protein accession | YP_001790512 |
Protein GI | 171058163 |
COG category | [R] General function prediction only |
COG ID | [COG1277] ABC-type transport system involved in multi-copper enzyme maturation, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.180659 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAACCC GCCAGATCCT GACCCTCGCG GCCAAGGAGT TCCGCGACCG CCTGCGCAAC CGCTGGGTGC TCGCGGTGGC GCTGGTGTTC GCGGTGTTCT CGCTCGTGAT CGCCTATGCC GGCGGCGCGC AGCAGGGCAC GGTGGGCCTG CGCTCGATCG AGTTCACCAT CGCCAGCCTC GTCAGCCTGG TGATCTACCT GGTGCCGCTG ATCGCGCTGC TGCTGGGCTT CGACGCCATC GTCGGCGAGC GCGAGCGCGG CTCGCTCGAC CTGCTGCTGG CGCTGCCGAT CACGCGCGGC GAGCTGCTGC TGGGCAAGTA CCTCGGCCTG GCCGCGGCGC TCGCGCTGGC GATGCTGGCC GGCCTGGCGC TGGTGGGCGG CGTGCTGGGC TGGCAGTTCG GCGCCAACGG CTTGTTCCAC TACGCCGGCT TCGTGTTGAG CACGCTGCTG ATGGGCCTGG CCTTCCTGAG CCTGGCGGTG CTGCTGTCGG TGCTGGCGCG TGACCGCACG CGCGCCTCCG GCCTGGCGAT CGCGCTGTGG TTCTTCTTCG TGCTGGTGTT CGACCTGCTG CTGCTGGGCG CGCTGGTGGC CAGCGGCGGC CAGTACGGCG GCGCGGCCTT CCCCTACCTG CTGCTGCTCA ATCCGGCGGA CGTGTTCCGC ATCCTCAACG TGTTTTCGCT CGACGACGTG CGCAGCGCCT ACGGCCTGAC CAGCATCGTG CCGGCCGCCC TTGCCAATCC CTGGCTGATG GGCACGGCGA TGCTGGCCTG GATCGTCGCG CCGCTGGGCC TCGCGAGCTG GAGATTCAAG CCATGA
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Protein sequence | METRQILTLA AKEFRDRLRN RWVLAVALVF AVFSLVIAYA GGAQQGTVGL RSIEFTIASL VSLVIYLVPL IALLLGFDAI VGERERGSLD LLLALPITRG ELLLGKYLGL AAALALAMLA GLALVGGVLG WQFGANGLFH YAGFVLSTLL MGLAFLSLAV LLSVLARDRT RASGLAIALW FFFVLVFDLL LLGALVASGG QYGGAAFPYL LLLNPADVFR ILNVFSLDDV RSAYGLTSIV PAALANPWLM GTAMLAWIVA PLGLASWRFK P
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