| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1437 |
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| Symbol | |
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| ID | 6159844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1516388 |
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| End bp | 1517203 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641664191 |
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| Product | shikimate dehydrogenase substrate binding subunit |
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| Protein accession | YP_001790470 |
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| Protein GI | 171058121 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.563675 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGCTCG GCGACCCGGT CGCCCAGGTG CAGGCGCCGC AGATCTTCAA CCGCGTGTTC
CAGCGCTTCG GCGTCGATGC GGTGCTGGTG CCGGCGCAGG TGCGGGCAGA CTGCCTCTCG
GCTTTCGCCC ACGCGGTGCT GGCGGCCGGC AACATCGACG GCCTGTGGCT GACGATCCCG
CACAAGACCA CGCTGGTGTC GGAACTGGCC CGCATGGACG CCTGCGCCCG CGCGGCGCAA
TCGGTCAACG CGGTGCGCCG GCAGGCTAAC GGCGAGCTCG AAGGCGCGCT GTTCGACGGC
CTCGGCCTGG TCGGCGCGCT GCGTCACTTC GGCATCGAGC CGCGCGGCCT GCGCGTGCTG
CTGCTGGGCG CCGGTGGCGC GGGCGCCGCG ATCGCCGCGG CCCTGCTCGA CCACGGCGTG
GCCCGACTGG CGCTGCACGA CCTGGGCTCG CGCGCCACCG AACTGGCCGG CCGACTGGCT
GACGGCGATG ACGGCCGTAT CAGCGTGCAA TCCGCCGACC CGGAAGGTTT CGACCTGGTG
ATCAACGCCA CCCCGCTGGG CCTGCGCGCC GACGACCCGC TGCCGTTCGA CGTGCGCCGC
CTCGACGCCC GCGCCAAGGT GGTCGACATC CTGATGAAGC CGCAACCCAC GCCCTTGCTG
CGCGCCTGCG CCGAACGTGG CATCGAGGCG CATCCGGGCT TCGAGATGCT GGTGCAGCAA
GTGCCGCACT ACCTGTCCTT CTTCGGCATG GACGCCATTG CCGAGACCTT GAAAACGGAC
TTGTCCGATG TCCGCCTGGG CCTGCAGTCG CTCTGA
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| Protein sequence | MVLGDPVAQV QAPQIFNRVF QRFGVDAVLV PAQVRADCLS AFAHAVLAAG NIDGLWLTIP
HKTTLVSELA RMDACARAAQ SVNAVRRQAN GELEGALFDG LGLVGALRHF GIEPRGLRVL
LLGAGGAGAA IAAALLDHGV ARLALHDLGS RATELAGRLA DGDDGRISVQ SADPEGFDLV
INATPLGLRA DDPLPFDVRR LDARAKVVDI LMKPQPTPLL RACAERGIEA HPGFEMLVQQ
VPHYLSFFGM DAIAETLKTD LSDVRLGLQS L
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