| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1436 |
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| Symbol | |
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| ID | 6159843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1515381 |
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| End bp | 1516226 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664190 |
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| Product | IclR family transcriptional regulator |
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| Protein accession | YP_001790469 |
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| Protein GI | 171058120 |
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| COG category | [K] Transcription |
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| COG ID | [COG1414] Transcriptional regulator |
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| TIGRFAM ID | [TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.580243 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTTATC CCAGGTCTAC CCCAGTGGCT GACGCAGCCG ATGCCTCGCT CGGTTCAGGC
CTGAGCAGCC ACGGCGGCGA TTTCGACTTC CCGATCGACC CGGCCGACCT CATCGTCGGC
CTGGGCCGCG GGCTGGCGGT GATCGAATCG TTCGACGACG AACACGCGCG CATGACCTGC
GCCCAGGTCT GCCAGCGCAC TGCCATACCG CGCACCGCCG TGCGGCGGCA TCTGCTCAGC
CTGTGCCATT ACGGCTACGC CGCCACCGAC GGCAAGCACT TCTGGCTGAC GCCGCGGGTG
CTGCGCCTGG GCCAGAGCTA TCTGGAAGGC GCACGGCTGC CACGGCTGGT GCAGCCCTTC
ATCCAGCGTC TGTCGATGGC CACCGGCGAG ACCGTCAACG TCAGCGTGCT CGACGGCCAC
GAGGTGGTCT ACGTGGCGCG CAGCAACAGC CCGCGGGTGG TGTCGATCGG CTTTCACGCC
GGGGCGCGTG TGCCGGCCCA TGTGGTCAGC CCGAGCCGCG TGCTACTCGC CACCTTGAAG
GATGACGCGC TGCTGCACTG GGTCGCCACG CACGAGTTCG CAGGTTTCAC CGCCAGCACC
GTGGTGACGG CCGAGAGCTT CACCGAGGAG GTCCGGCTGG CGCGTCATCA GGACCACTGG
ATGTCGGTCG GCCAGCTCGA CGTCGGCCTG ACCGGCGTGT CCACCGTGCT GCGTGATCGC
TACGGCGAGT GCAAGGCCGC GCTGGGCATG ACCTTGCAGA GCGCCGCCTG GCCGCCCGAG
CAGATCGTCG CCCGGCTGGT GCCGGCGCTG CTGGAGACGG CGCAGACGCT GCGCCCGGTG
ATCTGA
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| Protein sequence | MVYPRSTPVA DAADASLGSG LSSHGGDFDF PIDPADLIVG LGRGLAVIES FDDEHARMTC
AQVCQRTAIP RTAVRRHLLS LCHYGYAATD GKHFWLTPRV LRLGQSYLEG ARLPRLVQPF
IQRLSMATGE TVNVSVLDGH EVVYVARSNS PRVVSIGFHA GARVPAHVVS PSRVLLATLK
DDALLHWVAT HEFAGFTAST VVTAESFTEE VRLARHQDHW MSVGQLDVGL TGVSTVLRDR
YGECKAALGM TLQSAAWPPE QIVARLVPAL LETAQTLRPV I
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