Gene Lcho_1378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1378 
Symbol 
ID6159760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1461883 
End bp1463175 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content67% 
IMG OID641664132 
Productfibronectin type III domain-containing protein 
Protein accessionYP_001790411 
Protein GI171058062 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0810] Periplasmic protein TonB, links inner and outer membranes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGTTG ATTTTCAGCC GTACCGAAAA GCATTGCTTG TTTCGCTGAT CGCCAGCACC 
TTTCTCGTCA CGGCCTGTGG CGGTGGTGGT GGCGGTGGCC CCGATGACAC CAGCGTGGCC
TTGAACGGTG ACGAGGCAGC CGCTGCCGAC GGCGACACGC CCGACTCGAA AGCCGAGATC
TCCGCGGCCG CGACCACCAC GACCTCGACC TCGACCTGGA GCTTTCTCGC CAAGGAAGGC
GCCTCGTTCA CGGTCGGCAC CGGGAAGACC GTCCGCTACG GCGCCGGAAC CCAATGGATC
CAGAAGACGG TGTCGGGCAC GGCCGCCTGC ACCAGCAACT TCTTCGGCTC CGACCCCGCG
TTCGGCATCG TCAAGGAATG TCAGCTGCTG AACACCGTCA CGTCGACCAC CACCGCCGCG
CAATCGATCT TCACGACGCA GACGCCGGTC ACGACCAACA TCACCGATGG TGTCGGCGTC
AACTACGAGC TGGGCATGCG CTTCAAGGCC TTGGTGGCCG GCCAGATCAA GGGTGTGCGC
TTCTACAAGT CCTCGAAGGA AACCGGCACC CACACCGGCA GGATCTGGTC TTCCACGGGG
GCGCTGCTGG GCTCGGTCGT GTTCACGGCC GAGACCGCGT CCGGCTGGCA GACCGCCACC
TTCGCCACCC CGATCAATGT CGTCGCGGGT GGCCTCTATG CCGTGACCGT CAACACCGGC
GCCACCTACT ACGTGGCGAC GAGCAACGGC CTGGCCACGC AGATCGCCAA CGGCTCCCTG
AGCACGATCG TCGGCAGCAA CGGCATCTTC GGCCCGGTCG GTGCCTACCC CACGCAGTCG
TGGCAGGCCT CCAACTATTT CCGCGACGTG GTGTTCGTGC CGACGACGGC TGCACCGGCT
CCGGCGCCAG TCCCCGCACC GGCTCCTGCG CCGGCTCCTG TACCCGCGCC AGCCCCTGCG
CCGGCTCCTG CACCGGCGCC GGCCCCAGCG CCCGCACCGG CCCCAGCTCC CGCACCGGCA
CCGGCACCGG CGCCCACGCC GACTCAGGCG ACGGCCACCC TGTCATGGGC GGCGAATCCT
GAAGCGGCCG TGACGGGCTA TCGCGTGTAC TACGGAACGG CTTCCAGGAC GTACTTCCAG
GCCAAGGGCG CCGGCATCGC CATCGGCAAG GTGACCAGCC ACACGCTCTA TGCCCTGCAG
TCGGGTTATC GATACTATTT CGCGGTGACC GCCGTCGACG CCGCCGGCAA CGAGAGCCTC
TACTCGAGCG AAGCCTCCAA GCTCATTCAG TAG
 
Protein sequence
MQVDFQPYRK ALLVSLIAST FLVTACGGGG GGGPDDTSVA LNGDEAAAAD GDTPDSKAEI 
SAAATTTTST STWSFLAKEG ASFTVGTGKT VRYGAGTQWI QKTVSGTAAC TSNFFGSDPA
FGIVKECQLL NTVTSTTTAA QSIFTTQTPV TTNITDGVGV NYELGMRFKA LVAGQIKGVR
FYKSSKETGT HTGRIWSSTG ALLGSVVFTA ETASGWQTAT FATPINVVAG GLYAVTVNTG
ATYYVATSNG LATQIANGSL STIVGSNGIF GPVGAYPTQS WQASNYFRDV VFVPTTAAPA
PAPVPAPAPA PAPVPAPAPA PAPAPAPAPA PAPAPAPAPA PAPAPTPTQA TATLSWAANP
EAAVTGYRVY YGTASRTYFQ AKGAGIAIGK VTSHTLYALQ SGYRYYFAVT AVDAAGNESL
YSSEASKLIQ