| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1378 |
|---|
| Symbol | |
|---|
| ID | 6159760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1461883 |
|---|
| End bp | 1463175 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641664132 |
|---|
| Product | fibronectin type III domain-containing protein |
|---|
| Protein accession | YP_001790411 |
|---|
| Protein GI | 171058062 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTTG ATTTTCAGCC GTACCGAAAA GCATTGCTTG TTTCGCTGAT CGCCAGCACC
TTTCTCGTCA CGGCCTGTGG CGGTGGTGGT GGCGGTGGCC CCGATGACAC CAGCGTGGCC
TTGAACGGTG ACGAGGCAGC CGCTGCCGAC GGCGACACGC CCGACTCGAA AGCCGAGATC
TCCGCGGCCG CGACCACCAC GACCTCGACC TCGACCTGGA GCTTTCTCGC CAAGGAAGGC
GCCTCGTTCA CGGTCGGCAC CGGGAAGACC GTCCGCTACG GCGCCGGAAC CCAATGGATC
CAGAAGACGG TGTCGGGCAC GGCCGCCTGC ACCAGCAACT TCTTCGGCTC CGACCCCGCG
TTCGGCATCG TCAAGGAATG TCAGCTGCTG AACACCGTCA CGTCGACCAC CACCGCCGCG
CAATCGATCT TCACGACGCA GACGCCGGTC ACGACCAACA TCACCGATGG TGTCGGCGTC
AACTACGAGC TGGGCATGCG CTTCAAGGCC TTGGTGGCCG GCCAGATCAA GGGTGTGCGC
TTCTACAAGT CCTCGAAGGA AACCGGCACC CACACCGGCA GGATCTGGTC TTCCACGGGG
GCGCTGCTGG GCTCGGTCGT GTTCACGGCC GAGACCGCGT CCGGCTGGCA GACCGCCACC
TTCGCCACCC CGATCAATGT CGTCGCGGGT GGCCTCTATG CCGTGACCGT CAACACCGGC
GCCACCTACT ACGTGGCGAC GAGCAACGGC CTGGCCACGC AGATCGCCAA CGGCTCCCTG
AGCACGATCG TCGGCAGCAA CGGCATCTTC GGCCCGGTCG GTGCCTACCC CACGCAGTCG
TGGCAGGCCT CCAACTATTT CCGCGACGTG GTGTTCGTGC CGACGACGGC TGCACCGGCT
CCGGCGCCAG TCCCCGCACC GGCTCCTGCG CCGGCTCCTG TACCCGCGCC AGCCCCTGCG
CCGGCTCCTG CACCGGCGCC GGCCCCAGCG CCCGCACCGG CCCCAGCTCC CGCACCGGCA
CCGGCACCGG CGCCCACGCC GACTCAGGCG ACGGCCACCC TGTCATGGGC GGCGAATCCT
GAAGCGGCCG TGACGGGCTA TCGCGTGTAC TACGGAACGG CTTCCAGGAC GTACTTCCAG
GCCAAGGGCG CCGGCATCGC CATCGGCAAG GTGACCAGCC ACACGCTCTA TGCCCTGCAG
TCGGGTTATC GATACTATTT CGCGGTGACC GCCGTCGACG CCGCCGGCAA CGAGAGCCTC
TACTCGAGCG AAGCCTCCAA GCTCATTCAG TAG
|
|---|
| Protein sequence | MQVDFQPYRK ALLVSLIAST FLVTACGGGG GGGPDDTSVA LNGDEAAAAD GDTPDSKAEI
SAAATTTTST STWSFLAKEG ASFTVGTGKT VRYGAGTQWI QKTVSGTAAC TSNFFGSDPA
FGIVKECQLL NTVTSTTTAA QSIFTTQTPV TTNITDGVGV NYELGMRFKA LVAGQIKGVR
FYKSSKETGT HTGRIWSSTG ALLGSVVFTA ETASGWQTAT FATPINVVAG GLYAVTVNTG
ATYYVATSNG LATQIANGSL STIVGSNGIF GPVGAYPTQS WQASNYFRDV VFVPTTAAPA
PAPVPAPAPA PAPVPAPAPA PAPAPAPAPA PAPAPAPAPA PAPAPTPTQA TATLSWAANP
EAAVTGYRVY YGTASRTYFQ AKGAGIAIGK VTSHTLYALQ SGYRYYFAVT AVDAAGNESL
YSSEASKLIQ
|
|---|
| |