Gene Lcho_1332 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1332 
Symbol 
ID6162738 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1417833 
End bp1418330 
Gene Length498 bp 
Protein Length165 aa 
Translation table11 
GC content71% 
IMG OID641664086 
Producthypothetical protein 
Protein accessionYP_001790365 
Protein GI171058016 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCGAC TTCTCAGGCA CATCGCCTGG TTCTTTGCCC TCGCCGGTGG CGCGGTGGCC 
AGCGGCGTGG CGCTGATGGT CGTGGTCAGC ATCGCCGGGC GGGCGCTGTT TGCGCAGCCG 
ATCCAGGGTG ATGTGGAGCT GACGCAGTTC GGCATCGCGC TGTGCATCTC GCTGTGCCTG 
CCGTGGTGCC AGCTGCACGG TGCCAACATC GTGGTCGACT TCTTCACCCA GCGCCTGCCG 
CAGCGTGGCG TGCGCGCGCT CGACGGCATC GGCGCGCTGC TGCTGGCGCT GATGTGCGCG 
CTGCTGTCGC TGCGCACGGC CGCCGGCGCC ATCGCCGTCA GCGAGGCCGG CGAGACCACC 
ATGATCCTCG GCCTGCCGAT GGGCTGGAGC TACCTGATGC TGGCCCCCGG CCTCGGCCTG 
ACCGCGCTGG TGGCGCTGTG GCAGGCCCAG CGCCTGCTGC GCGGGCTGAA CGCGCATGTG 
GACGGGAGCG CGGCATGA
 
Protein sequence
MHRLLRHIAW FFALAGGAVA SGVALMVVVS IAGRALFAQP IQGDVELTQF GIALCISLCL 
PWCQLHGANI VVDFFTQRLP QRGVRALDGI GALLLALMCA LLSLRTAAGA IAVSEAGETT 
MILGLPMGWS YLMLAPGLGL TALVALWQAQ RLLRGLNAHV DGSAA