| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1331 |
|---|
| Symbol | |
|---|
| ID | 6163025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1416511 |
|---|
| End bp | 1417836 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641664085 |
|---|
| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
|---|
| Protein accession | YP_001790364 |
|---|
| Protein GI | 171058015 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.446263 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCAG GTGAGATCGG CCTGCTGATG TTCGCCGGCA TGCTGGTGCT GATGGCGCTG
CGGGTGCCGA TCGCCGCGGC CATGTTCATC CCCGGCGCGC TCGGCTACTG GGTGCTGACC
AACGACATGG CGCTGCTCAA CATGCTCAAG GGCAGCGCGG TGGCGCGGCT GACGGTGTAC
GACCTGTCGG TCATCCCGCT GTTCCTTCTG ATGGGCCAGT TCGCCACCCA GGGCGGGCTG
TCGCGGGCGC TGTTCAAGGC GGCGGCGGCG TTTGTCGGTC ACATCCGCGG CGGGCTGGCG
ATGGCGGCCG TGCTGTCGGC GGCGGCCTTC GGCGCGGTCT GCGGCTCGTC GGTCGCCACC
TCGGCCACCA TCACGCAGGT GGCCTATCCG GAGATGAAGG CGCACGGCTA CCACGGCCGC
CTCACCACCG CCGCGCTGGC CAGCGGCGGC ACGCTCGGCA TCCTGGTGCC ACCGTCGGTG
CCGCTGGTGG TCTACGCCAT CCTGACCGAG CAGAACATCG GCAAGCTGTT CGCCGCCGCG
ATGCTGCCGG CGCTGCTGGC GGTGATCGGC TACCTGGCGG TGATCGCGCT GGTCTGCCGC
TGGCGGCCCG AACTGGCCAC GCCCAGCGAG CCGCTGCCGT GGGCCGCGCG CTGGCGTGCG
CTGCTGGGCG TGTGGCCGAT CGCGCTGATC TTCGTGACCG TGTTCGGCGG CATCTACGGC
GGCATCTTCT CGCCGACCGA AGCCGCCGCG GTGGGCGCGG TGGGCACCTT CCTGGCCGCG
CTGGTGCGGC GCGAACTCGA CCGAGCCGGC ATCATCCGCA GCTTCCTGGG CACCGCCGAG
ACCTCGGCGA TGGTGTTCAT GATCTTCCTC GGCGCCGACA TGATGAACTC GGCGCTGGCG
CTCACGCAGA TGCCCGCGCG CATCGCCGAA TGGGTCGGCC ACCTGCCGGT GGCGCCGCTG
GTGATCGTGG GCGCCATCCT GGCGCTCTAC ATCCTGCTGG GCTGCGTGAT GGACGAGCTG
TCGATGATGC TGCTGACCAT CCCGGTGATC TTCCCCGCCG TGATGAGCCT GGAGCTGTTC
GGCCTGGCCG CCGAGCCCAA GGCGATCTGG TTCGGCATCC TGGTGCTGAT GACGGTGGGC
ATCGGGCTGA CGGCGCCGCC GGTAGGGCTG AACGTCTACG TCGTCAACAG CATCGCCAAG
GATGTGCCGA TGCACGAGAC CTACAAGGGC GTGCTGCCCT TCCTGGCGTC GGACATGCTG
CGGCTGCTGC TGTTGCTGTT CTTCCCGGGG CTCACGCTGG GCATGATCGG GCTGTTCTTC
AGCTGA
|
|---|
| Protein sequence | MNPGEIGLLM FAGMLVLMAL RVPIAAAMFI PGALGYWVLT NDMALLNMLK GSAVARLTVY
DLSVIPLFLL MGQFATQGGL SRALFKAAAA FVGHIRGGLA MAAVLSAAAF GAVCGSSVAT
SATITQVAYP EMKAHGYHGR LTTAALASGG TLGILVPPSV PLVVYAILTE QNIGKLFAAA
MLPALLAVIG YLAVIALVCR WRPELATPSE PLPWAARWRA LLGVWPIALI FVTVFGGIYG
GIFSPTEAAA VGAVGTFLAA LVRRELDRAG IIRSFLGTAE TSAMVFMIFL GADMMNSALA
LTQMPARIAE WVGHLPVAPL VIVGAILALY ILLGCVMDEL SMMLLTIPVI FPAVMSLELF
GLAAEPKAIW FGILVLMTVG IGLTAPPVGL NVYVVNSIAK DVPMHETYKG VLPFLASDML
RLLLLLFFPG LTLGMIGLFF S
|
|---|
| |