| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1277 |
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| Symbol | |
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| ID | 6162529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1361219 |
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| End bp | 1363144 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664031 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001790311 |
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| Protein GI | 171057962 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0000168 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACCTCC AGCGCCCCGC GAACGTCGTG ATCCCTGCCG CGCCCGGCGC CCGAGCGTTG
CGCCTGCTGG CTGCCACGCT GACCGGTCTG CTGTTGACGA CCGCGCCGGC TGCGCAGCCC
ACGGCGGCAT CGCCGTCGCC GATTGCCGGC TCGTCGATCA CGGCCACGCC GCTCGACACG
TGGCAGCACG CCTATACCGC CTTCGGCACG CCCAGGTACG CCGAAGGTTT TGCGAACTTC
GCCTACGTCA ACCCGACCGC GCCGCGCCGC GGCACGCTGT TCCTGCGCAA CCCCGACCGG
CGCAGCAGCT TCGACAAGTT CAACCCGTTC ACGATCAAGG GCAGCGCACC GGCGGGTGTC
GGGCTGTTCA TGTTCGAGAG CCTGGCCACC CGCTCGATGG ACGAGCCGCA GTCGATGTAC
GGCCTGCTGG CGCAGCAGAT GTCGGTGGCG CCCGACCTGT CGGCCATCAC CTTCCGCATC
CACCCGCAGG CGCGTTTCTC GAACGGCGAC GCCGTCACCG CCGACGACGT GGTGCACAGC
TTCCGGCAGC TCACCAGCCC GCAGGCCGCG CCGGGCGTGC GCACGGCGAT GTCCGACATC
GCCGACGTGG TCGCGCTCGA CGCCACCACC GTGCGCTTCG ACCTGCGCGA ACGCAAGATG
GACGCGCTGT TCACCGCCGG CGGCATGGCG GTGTTCTCTC GCAAATGGGG CGCCGGCAAG
CAGTTCGACG CCATCATCGA CGAGTACCCG ATCGCCAGCG GCCCGTATCT GATCGACAAG
GTCGAGCGGC CGCGGCGCAT CGAGTTCCGC TTCAACCCCC GGTACTGGGC GCGTGAGCTC
GGCGTGCGGC GCGGCCACTT CAACTTCGAA CGCGTGGTCT ACCGCATGTA CCAGGACCCG
GCGGTGGCGG CCGAGGCCTT CAAGGCCGGC GAGTTCGACC TGATGAAGGA GTACAGCGCG
CGGGCCTGGG TGCGACAGCA CCAGGGCGTG AAATGGCGCG ACGGCCGCAT CGTCAAGAAC
GCCTTCCCGA CCGCCTACGG CCAGGGCCTG CAGGCCACCG ACTTCAACCT GCGCCGGCCG
ATCTTCCAGG ACGTGCGGGT GCGCGAGGCC ATCGTGCACG CCTGGGACTT CGAGCGCCTG
AACCGCTATG GCCAGTACGC GCGCTCGAAC AGCGTGTTCA ACAACTCCGA GTTCGCGGCG
CAGGGCTCGC CGTCGCCCGC CGAGCTGGCG CTGCTGGAAC CGTTCCGCGC CGAACTGCCG
CCGCGGGTGT TCGGCCCGGC CTTTGTCGCG CCGATCAACG GTGACTCGCA ACGGCTGCGC
GCCAACCTGC TGCGCGCGCG CGATCTGCTC GCCCAGGCCG GCTGGAAGAT CGCCGACGAC
GGCCGGCTGC GCAATGCCCG CGGCGAGCCC TTCGAGATCG AATACCTCGA ACCCAGCCAG
CCCGGGCGCA ACACCGACTT CCAGAAGAAC CTCGAGAAGC TCGGCATCAC GCTGAAGGAG
CGGCTGGTCG ACTTCGCGCT CTACCGGCGC CGGCTCGAGA ACTACGACTT CGATCTGGTC
ACGATCGTCG AAGGCGACTT CACGCTGCCG GGCGCGTCCG ACCTCAAGGC GATCTACGGC
AGCGCCTCGG CCGACGAGAA GGGCAACAAC AACTTCCGCG GCGTCAAGAG CCCGGCGGTC
GACGCGCTGA TCCAGGCCAT CTCCGACGCC AAGACCCTCG AGCAGCTGCG CACCGCCTGC
CGCGCGCTCG ACCGCGTCGT GATGTGGAAC TTCTGGCAGA TCCCCGAGCT GTACCTCAAC
AAGGAGCGCG TCTCGTACTG GAACCGCTTC GGCCTGCCGG CCGTGCAGCC GGGCTATTTC
TCGATCGACT CCGATGCACC GTGGCCGTTG TGGACGTGGT GGATCAAGGA CCCGGTCACA
CCATGA
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| Protein sequence | MHLQRPANVV IPAAPGARAL RLLAATLTGL LLTTAPAAQP TAASPSPIAG SSITATPLDT
WQHAYTAFGT PRYAEGFANF AYVNPTAPRR GTLFLRNPDR RSSFDKFNPF TIKGSAPAGV
GLFMFESLAT RSMDEPQSMY GLLAQQMSVA PDLSAITFRI HPQARFSNGD AVTADDVVHS
FRQLTSPQAA PGVRTAMSDI ADVVALDATT VRFDLRERKM DALFTAGGMA VFSRKWGAGK
QFDAIIDEYP IASGPYLIDK VERPRRIEFR FNPRYWAREL GVRRGHFNFE RVVYRMYQDP
AVAAEAFKAG EFDLMKEYSA RAWVRQHQGV KWRDGRIVKN AFPTAYGQGL QATDFNLRRP
IFQDVRVREA IVHAWDFERL NRYGQYARSN SVFNNSEFAA QGSPSPAELA LLEPFRAELP
PRVFGPAFVA PINGDSQRLR ANLLRARDLL AQAGWKIADD GRLRNARGEP FEIEYLEPSQ
PGRNTDFQKN LEKLGITLKE RLVDFALYRR RLENYDFDLV TIVEGDFTLP GASDLKAIYG
SASADEKGNN NFRGVKSPAV DALIQAISDA KTLEQLRTAC RALDRVVMWN FWQIPELYLN
KERVSYWNRF GLPAVQPGYF SIDSDAPWPL WTWWIKDPVT P
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