| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1258 |
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| Symbol | |
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| ID | 6162915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1344905 |
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| End bp | 1345873 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664012 |
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| Product | porin |
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| Protein accession | YP_001790292 |
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| Protein GI | 171057943 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000170456 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACTTCC GCACTGCCTT TGCCCTGACC CTCGGCGCTG TCGCGCTGCT GCCGCTGGCG
GCTCACGCCC AGTCATCGTT CAACCTTTCC GGCCGGGTCG ACCTGGGCCT GCGCCACGAC
TCGGCCATCG ATGCCGCCAC CGGCAGCAAG ATCGGCACCC GGATGGCTTC GGGCACCAAC
AGCAACATCG CGCTGACGGG CACCGAAGAC CTGGGCGGCG GCATGGCCGC CTTCTTCAAC
GTCGAGCATC GCTTCAACGC GAGCAACGGC GCGGTATCCG ATCCGGCGTC GTTCTGGAAC
GAGATCTCGG TGGTCGGCCT GCGCGGCTCG ATGGGCTCGG TGCAGCTCGG CCGCCAGGAC
GGCCCGATCT TCTACGGCCT GTCACCCGAT GCGTTCTACG GCGACTACGT CGGTGGCCGC
GGTGAACGCA AGGCCGGCGC CGACGACAAG TTCAACAACG GCGTGCTGTA CATGAGCCCG
ACCGTCAACG GCCTGCAGCT GATCCTGGGT GCCACGGTCG ACAAGGGCGC GCCGATCGGC
GGCCTGCAGC CCGACCGCGC CCGTGCCGGC GCGCTGCGCT ACTCGAACGG CGCCTTCACG
GCGTCGACCG CATTGGCCAA GCGCTTCAAC GGCGACACCG CCTACGGCGT GGGCAGCACC
TACAACTTCG GTGTGGCGAC GCTGCTGTTC GTGGCCGGTC GCAACGACGG CGAGGGCATC
GTCGGCCTGT CCGACGGCAA GCGCACGACG CTCGACATCG GCACCATCGT GCCGGTCAGC
GCCCAGGGTT CGGTGCGCGC CAAGTACAAC ACCGACAAGC GCGGCGCCTC GACCACCCGC
AACCTCGGCC TGGGCTACCT GCACGACCTG AGCAAGCGCA CCAACCTGTA CGTGACCGGC
AGCCAGACCA AGGTGACCGG CGCCAGCGCC ACCGAGGCGA TGGACATGGG CATCGTCCAC
CGCTTCTGA
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| Protein sequence | MNFRTAFALT LGAVALLPLA AHAQSSFNLS GRVDLGLRHD SAIDAATGSK IGTRMASGTN
SNIALTGTED LGGGMAAFFN VEHRFNASNG AVSDPASFWN EISVVGLRGS MGSVQLGRQD
GPIFYGLSPD AFYGDYVGGR GERKAGADDK FNNGVLYMSP TVNGLQLILG ATVDKGAPIG
GLQPDRARAG ALRYSNGAFT ASTALAKRFN GDTAYGVGST YNFGVATLLF VAGRNDGEGI
VGLSDGKRTT LDIGTIVPVS AQGSVRAKYN TDKRGASTTR NLGLGYLHDL SKRTNLYVTG
SQTKVTGASA TEAMDMGIVH RF
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