| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1248 |
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| Symbol | |
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| ID | 6163924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1335681 |
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| End bp | 1337162 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641664002 |
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| Product | deoxyribodipyrimidine photo-lyase |
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| Protein accession | YP_001790282 |
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| Protein GI | 171057933 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0415] Deoxyribodipyrimidine photolyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00593835 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCGCG CTGTCGTCTG GTTCAAGCGC GACCTGCGCG TGACCGACCA CGCGCCGCTG
GCCGAGGCCG CACGCTGCGA CGCCGCGCTG GCGCTGTTCA TCATCGAACC CGCCTGGCTG
GACAGCCCCG AGTGCCACCC GCGACACGTC ACCTGGCTGC TCAAGTGCCT GGCACCCCTG
CGCGACGCGC TGGCCGCACG CGGCCTGCCG CTGCTGGTGC GCACGGGCGA GGCGGTCGAG
GTGCTGGCGG CGCTGCGGCG CGAATTCGCC TGTACGCGGC TGTTCAGCCA CGAAGAGACC
GGCCCGGGCT GGAGCTACGC GCGCGACCGG GCCGTGGCGC GCTGGTGCCG TGCGCACGGC
GTGGCCTGGA CCGAGTGGCC ACAGACCGGC GTGATCCGCC GCCTGAAAGA CCGCCGCGGC
TGGGCCGGCC GCTGGCAGCA GCGCATGGAC GCGCCGTGCG TGCGCGTGCC GGCGGGCTGG
CGCGCCGCAC CGGGCTTCGC ACCATCTACG CTGCCGGCCG ACCTGCCCAC GCTGCGCGAG
CTGGGCGTGG CCACCGCGCC CGACACGCCA CCGGCCGGCG AGGCGGCGGC GCAGCAGATG
CTGCAGAGCT TCCTCGGCGG CCGCGCGCTC GGCTATCGGC GCCATCTGTC GAGTCCGCTC
GCGGCAGAAG CCGGCTGCAG CCGGTTGTCG GAACACCTCG CCTTCGGCAC GCTGTCGTTG
CGCATGCTGC ACCAGGCCAC CGAGGCCACC TTGCGCGCCA CCAGCGACCG CGAACTGGCC
TACAGCCTGC GCGGCTTCGC CGGCCGCCTG CGCTGGCACT GCCACTTCAT GCAGAAGCTG
GAGGACGAGC CGGCGATCGA GTGGCGCAAC TTCGCGCGCA GCGCCGACGG CCTGCGACCC
GGCGACGGCA GCGCGCTGCA GACCGCCGAC CGCGAGCGCC TGCAGGCCTG GTGCGAAGGC
CGCACCGGCT TCCCGATGGT CGACGCCTGC ATGCGCCAGC TGCGCGCCAC CGGCTGGCTG
AACTTCCGCA TGCGGGCGAT GCTGGTCAGC TTCGCGGCCT ATCACCTGTG GCTGCACTGG
CGCGAGCCGG GGCTGTTCCT CGCTCGCCAG TTTCTCGACT TCGAGCCCGG CATCCACTGG
AGCCAGATGC AGATGCAGTC CGGCACCACC GGCATCAACA CGCTGCGCAT CTACTCGCCG
GCCAAGCAGG CGCTCGATCA CGATCCACAG GGCGAGTACG TCCGCCGCTG GGTGCCCGAG
TTCGGCAGCG CCGCCTACCC GGCGCCGATC GTCGACGAAC GCGCTGCGGT GGCTGCCGCC
AAGCAGCGGC TCTACGGCCT GCGCCAGACA CCCGAGGCCC ATGACGAAGC CGGCGCCATC
CAGCACAAGC ACGGCTCGCG CAAGAGCGGC CTGCCGCCAT CGGGCAACCG GCCGACCCGA
CGCACCCGCG CAGCCGACGA CGGGCAAGGT CGGTTGTTCT GA
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| Protein sequence | MSRAVVWFKR DLRVTDHAPL AEAARCDAAL ALFIIEPAWL DSPECHPRHV TWLLKCLAPL
RDALAARGLP LLVRTGEAVE VLAALRREFA CTRLFSHEET GPGWSYARDR AVARWCRAHG
VAWTEWPQTG VIRRLKDRRG WAGRWQQRMD APCVRVPAGW RAAPGFAPST LPADLPTLRE
LGVATAPDTP PAGEAAAQQM LQSFLGGRAL GYRRHLSSPL AAEAGCSRLS EHLAFGTLSL
RMLHQATEAT LRATSDRELA YSLRGFAGRL RWHCHFMQKL EDEPAIEWRN FARSADGLRP
GDGSALQTAD RERLQAWCEG RTGFPMVDAC MRQLRATGWL NFRMRAMLVS FAAYHLWLHW
REPGLFLARQ FLDFEPGIHW SQMQMQSGTT GINTLRIYSP AKQALDHDPQ GEYVRRWVPE
FGSAAYPAPI VDERAAVAAA KQRLYGLRQT PEAHDEAGAI QHKHGSRKSG LPPSGNRPTR
RTRAADDGQG RLF
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