Gene Lcho_1229 details

Gene Information

• Locus tag: Lcho_1229
• ID: 6163929
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1315029
• End bp: 1317017
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641663983
• Product: TonB-dependent receptor plug
• Protein accession: YP_001790263
• Protein GI: 171057914
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG4771] Outer membrane receptor for ferrienterochelin and colicins

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 50
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGCGCA CTCACAAGAC CCTTCGAATC CCCATCGGCG CCTGCCTTCT GTCCTTGCTC 
TGCGCGAGCC TGCCGGCGCT CGGCAACGAG GCCAGCGCCG AACTCGCCGA ACTGCCCCTC 
GATGCCCTGC TCGACATGCC GGTGACCGGT GCCTCGCGTT TCGTGCAGCG GCGCAGCCAG 
GCCGCCTCGG CGGTGACGGT GATCACGCGC GAGGAAATCC GCGCCTTCGG CTACCGCACC 
CTGAGCGAGG CGCTCGGCGG CGTGCGTGGC GTGACCGTGG CCACCGATCG CACCTACGAC 
TACCTCGGCG TGCGCGGCTT CCTGGCCAGC GGCGACTTCA ACACCCGGGT GCTGCTGCTG 
ATCGATGGCA ACCGCATCAA CGACGGTCTC TACGACCAGG CCTTCATCGG CGGCGAGTTT 
CCGCTTGACC TGGAGGCGGT CGAGCGCATC GAGTTCGTGC CCGGCCAGGG CTCGGCGGTC 
TACGGCGCCA ATGCGCTGTT CGGCGTCATC AACGTGATCA CGCGCGAGTC GAGCCGCGAC 
GGCAGCGGCC GGGCCTCGGT GGCGCTGGGC AGCGCCGGCG AGCGTACGCT GAAGGCGGCC 
CTGAACGCGC CGCTGCCCGG CGGCGGCCTG CAGCTGATGG CGTCGCGCCG GGTCAGCGCG 
GGCGAACCGT ACTTCGATGC CGCGCAGGTG GGCGTCGGCG CCGGCGACGG CTGGTCGCGC 
GGCACCGACG GCGAGCAGCG CAGCGCCGCC TACCTGCGCT GGGACCGGGG CGGCCTGGCG 
CTCAGCGTGC TGCATGCCGA GCGGCTCAAG GGCACGCCGG CCACCGTCGG GCTGATCTAC 
GGCGACCCGC GCAACAGCTA CCGCGACAGC TACAGCCAGG TCAACCTCGA AAACGTCTGG 
ACGCTCGACG CGGCGACCGC CGTGATCGCG CGGGCCTACC TCGGCCAATA TCACTTCGTC 
GGCAACTACC TGCTGGACTA CCCGCCGCCG ACCCTCAACC GCGACGTCGG TGACGGCCAC 
TGGCGGGGCC TGGAGGCGCG CATCACGTCG ACGCGCGCAG ACGGCCATCG GCTGGTGGCG 
GGTGTCGACG CGCAGGTCAT GAACCGCCTC GCGCAAGGCA ATTTCGACGT CGACCCGGCC 
GGCACGGTCT ACCTCGACGA CGCCCGCCGC GCCCGGCGCA CGGCGATCTA CCTCGAGGAC 
CAGATGACGC TGTCGCCCAC CTGGTCGCTG CACCTGGGCG CGCGCGCCGA TCAGGTGTCG 
GGCATGGCCA CGCAGCTCAA TCCGCGGCTG GGCCTGATCC ATCAGCCCGG CGCATCCTGG 
ACCTTCAAGG CGATCCACGG CCGCGCCTTC CGGCCGCCCA ATGTCTACGA GGCCCATTAC 
GCCGTCGACA CCCCGGCGGG TTACGTCGGC AATCCGGCGC TCGACGGCGA GCGGGTGCGC 
GGCGACGAGC TGATCGCCGA ATGGCGGCCG CAGGCGGCGT GGCGGCTGTC GGGCTCGTAC 
TACCGCAACC AGACCCGCCG GATGCTGCTG CTCGGCTACG ACGCGGCCGC CGACCGCTAC 
CGCTTCGACA ACGCCGGCAC GCAGGATCTG CGCGGTGCCG AGATCGAGCT CGAACACGCA 
CGAGGCGCGG CGCGCTATCG CCTCAACTAC AGCCTGAGCC GCCCGTCGCG CGCCGGTGCC 
GGCGCGGCCG AACTCGGTTA TCCGCAGCAC ATGCTCAAGG GCAGCGCGAT GCTGCCGCTG 
CCGCACGACT GGGTCGTCGG GCTCGAGTTC CAGGCGCAGA GCCGGCGCGG CGCGGCGCCC 
GGTGCGGCCC AGGCCCACCT GGCCCTGCAC GGCCACTGGT CGGCGATCGG CGCCGATCTG 
GCGCTGGGTG CACGCAACCT TTTCGACCGT CAGCTGTTCG ATCCCGGTGC CGACGCGCTC 
CGCCAGCCCG TGATCGCCGT GCCCGGTCGC CGCTGGCGGG TCGAAGCCAG CTGGCCGCTG 
GGCCGCTGA 

 

Protein sequence

MKRTHKTLRI PIGACLLSLL CASLPALGNE ASAELAELPL DALLDMPVTG ASRFVQRRSQ 
AASAVTVITR EEIRAFGYRT LSEALGGVRG VTVATDRTYD YLGVRGFLAS GDFNTRVLLL 
IDGNRINDGL YDQAFIGGEF PLDLEAVERI EFVPGQGSAV YGANALFGVI NVITRESSRD 
GSGRASVALG SAGERTLKAA LNAPLPGGGL QLMASRRVSA GEPYFDAAQV GVGAGDGWSR 
GTDGEQRSAA YLRWDRGGLA LSVLHAERLK GTPATVGLIY GDPRNSYRDS YSQVNLENVW 
TLDAATAVIA RAYLGQYHFV GNYLLDYPPP TLNRDVGDGH WRGLEARITS TRADGHRLVA 
GVDAQVMNRL AQGNFDVDPA GTVYLDDARR ARRTAIYLED QMTLSPTWSL HLGARADQVS 
GMATQLNPRL GLIHQPGASW TFKAIHGRAF RPPNVYEAHY AVDTPAGYVG NPALDGERVR 
GDELIAEWRP QAAWRLSGSY YRNQTRRMLL LGYDAAADRY RFDNAGTQDL RGAEIELEHA 
RGAARYRLNY SLSRPSRAGA GAAELGYPQH MLKGSAMLPL PHDWVVGLEF QAQSRRGAAP 
GAAQAHLALH GHWSAIGADL ALGARNLFDR QLFDPGADAL RQPVIAVPGR RWRVEASWPL 
GR