| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1149 |
|---|
| Symbol | |
|---|
| ID | 6164028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1230285 |
|---|
| End bp | 1231307 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641663903 |
|---|
| Product | membrane-bound metal-dependent hydrolase |
|---|
| Protein accession | YP_001790183 |
|---|
| Protein GI | 171057834 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1988] Predicted membrane-bound metal-dependent hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCAT TGACACAACT CGTGCTGGGT GCCTCGGTGA GCATGGCGGT GATGGGCCGC
GCGGCGCGGC CCGCCAAGGC CGCGGCCTGG GGCGCCCTGG CGGGCACCTT GCCCGATCTG
GACGTGCTGA TCGACCAGGG CGATCCGATC CTCGACATGG TGCTGCACCG TGCCGAGTCG
CATGCGCTCT TCTGGCTCAC GCTGTTTTCG CTGCCGTTTG CACTGGCCGT GGCCCGTTGG
CACGGCGAGA CCGATCGATG GCGGCGCTGG TGGGCCGCGC TCTGGCTGGC GCTGGTGACC
CATCCGCTGC TGGACCTGCT CACCATCTAC GGCACCCAGG TGCTGCTGCC GTTCACGAAT
CAGGCCTGGG GACTGGGCAG CGTGTTCATC ATCGACCCGA TGGTCACCGT GCCCTGGGCG
GTGGGCGTGG TGGCGGCGCT GCGCGCGGCC TCGCCCGAAC GCGCCCGCCG GGCCAACGTC
GTGGGCCTGT CGCTCGGCCT GGCCTACCTC GGCTGGGGCG CCGCGGTGCA GCAGCACGTG
CTGGCGAAGG CGCGGGATTC GCTGCGGGCG CAGGGGCTGC CGGCCGAGCA GGTGCTGGCC
ACGCCGACGC CCTTCAATTC GGTGCTGTGG CGGGTGGTGT CGGTGGGCAA CGGACAGTTC
CACGAGGGCT TCCACTCGCT GCTGGACGGA CCTGGGCCGA TCCGATTCGA CCGCTTCGAC
CAGGGCCGGC CGCTGGCGCA GGCGTTGCAG GCCCATGACG GACTGACGCG CATCCGCAGG
TTCAGCGACG GCTTCTGGGC CTTGCAGGCG CATCCGGACG GGCAGCTGCT GCTCTCCGAC
CTGCGCATGG GCCAGCAGCC CCATTACGTG TTCCGCTTTG CCATCGCCCG GCGTGACGAG
GCCACCGGCA CATGGTTGCC GATGGCACGC GCGGAATCGG CCGGCAGCCG CGCGCCGTTC
GCGCCCAGCG TGTCGTGGCT GTGGCGCCGC ATGGGCGGCG TGCCGGTCGC ACCGCCGCGC
TGA
|
|---|
| Protein sequence | MDSLTQLVLG ASVSMAVMGR AARPAKAAAW GALAGTLPDL DVLIDQGDPI LDMVLHRAES
HALFWLTLFS LPFALAVARW HGETDRWRRW WAALWLALVT HPLLDLLTIY GTQVLLPFTN
QAWGLGSVFI IDPMVTVPWA VGVVAALRAA SPERARRANV VGLSLGLAYL GWGAAVQQHV
LAKARDSLRA QGLPAEQVLA TPTPFNSVLW RVVSVGNGQF HEGFHSLLDG PGPIRFDRFD
QGRPLAQALQ AHDGLTRIRR FSDGFWALQA HPDGQLLLSD LRMGQQPHYV FRFAIARRDE
ATGTWLPMAR AESAGSRAPF APSVSWLWRR MGGVPVAPPR
|
|---|
| |