| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1126 |
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| Symbol | |
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| ID | 6163740 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1205482 |
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| End bp | 1206600 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641663880 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001790160 |
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| Protein GI | 171057811 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.293075 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCGCC GTTCCCTGGT CCTGACTGCC GCCGGCATCG GCATGGGCCT GCCCACGGGG
GTGGTCGCGG CCGGAAGCGA TCTCCTGCTG GGCCGCTTCG CCCCGCCGGG CGGCGCGCGC
GGCCCGGCGC TGCGCGATTT CCAGGCCGGC ATCCAGCTCG CGCTCGACAG CGCCAACGCG
CGCGGCGGCA TCGGCGGGCG CAAGCTGCGC TGGGTGCCGG TGGACGATCA GCAGCCGGCC
CAGATGCTGG CGATCAAGGC CCAGCGCCTG GCCACCGAAC CCGGTTTCGT CGCCTGGCTC
GGCCCGATCG GCCCGGTGCA GGGCCCGACG CTGGCGCAGA TGCCGGCCGA CACCCGCGCC
CCCGCGATCG GCGGCCTGGG CATCGGCGAC CGACAGCGCG AACAGGTGCG CGGCTGGCAT
TTCCACGTCC GCGCCAGCCA GGCGCGCGAG GCCGAGGCGC TGGCCCGCCA CCTCGCCACC
GTCCGGCTGA CCCGGGTGGC CGTGGTCACG CCCGGCGATC CGGCCGGCGC GACGCTGGCC
TCGCTGCTGG GTGCGGCGCT GGCGCGCGAG GGCATCAAGA CCCTGGCGCA AGCCGCCGTC
ACGCCCGACC CCGCGACCGT GCACGAGGCC ACCCGCAAGC TGATGGCGCT CGATCCGCAG
GCGCTGGTGC TGGCGCTGCC GGCGGCGCAG TCGATCCAGA TGATGGAGAT GGCCGCCGCG
CTGAACCGCC ATCCGGGCTT CTTCTCGATG TCGATGGGCG GCGAAGAGAC CCTCGCCGCC
GGCGCACTCA AGCTCGCGAG CGGCCTGGCC GTGGCGCAGG TGGTGCCCTA CCCCTGGAGC
CAGACCGACC CGCAGATCCT GTCGTACCGG CGCCTGTGCG AGCCCGCGCA GGTCAGGATC
GGCTACGCCA GCCTGGAGGG TTTCATCACC GCCCAGGTGC TGATCGAGGC CCTGCGGCGC
TGCGGCCGCG AGCTCGGCCG CAGCCAGCTG CGCGCCATGC TGACGGTGCT GCAGATGAAC
TGGGGCGGCA TGGAGATCGA CTTCAGCCGC GGCGAGATCG GCGGCTCGCG CTTCGTCGAG
ATGGTGCAGG TCGGCCCCGG CGGGCGCTAC ATCCGCTGA
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| Protein sequence | MRRRSLVLTA AGIGMGLPTG VVAAGSDLLL GRFAPPGGAR GPALRDFQAG IQLALDSANA
RGGIGGRKLR WVPVDDQQPA QMLAIKAQRL ATEPGFVAWL GPIGPVQGPT LAQMPADTRA
PAIGGLGIGD RQREQVRGWH FHVRASQARE AEALARHLAT VRLTRVAVVT PGDPAGATLA
SLLGAALARE GIKTLAQAAV TPDPATVHEA TRKLMALDPQ ALVLALPAAQ SIQMMEMAAA
LNRHPGFFSM SMGGEETLAA GALKLASGLA VAQVVPYPWS QTDPQILSYR RLCEPAQVRI
GYASLEGFIT AQVLIEALRR CGRELGRSQL RAMLTVLQMN WGGMEIDFSR GEIGGSRFVE
MVQVGPGGRY IR
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