| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1115 |
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| Symbol | |
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| ID | 6162297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1190945 |
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| End bp | 1191763 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641663869 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_001790149 |
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| Protein GI | 171057800 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.452944 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAGCC ATCCGACCCC TCTGCGATTC GACCGCCTGC TGCTGACCGG TGCCGCCGGT
GGCCTGGGCC GCGAGCTGCG CACGCGCCTG AAGGCCTATT GCGACGTGCT GCGCCTGTCG
GACATCAGCG ATCTCGGCGC CGCTGCCGCC GGTGAGGAGC TGATGCCCGC GCCGCTCGAG
GACGCCGCCG CCGTGCACGC GCTGCTGGCC GGTGTCGACG CCGTCGTGCA CCTGGGCGGC
GTGTCGACCG AGCAGCCCTG GCAGCCGATC CTGCAGGCCA ACATCATCGG CACCTACAAC
CTGTACGAAG CCGCGCGCAA GCACGGCGTC AAGCGCGTCG TGTTCGCCAG CTCGAACCAC
GTCACCGGCT TCTACCGGCA GGACGAGGTG GTGTCGCCGA AGGATCCGAT GCGGCCCGAC
GGCCTCTACG GCCTGTCCAA GGCCTTCGGC GAGAACCTGG CGCAGTTCTA CTTCGACCGC
TACGGCATCG AGACCGTCAG CGTGCGCATC GGCTCGTCCT TCCCCGAGCC GAAGAACCGT
CGCATGCTGG CCACCTGGAT GAGCTTCGAC GACCTCGAGC GCCTGGTGAT GGCCGCACTC
ACCGCGCCGG TGATCGGCCA CAGCGTCATC TACGGCATGG GCGACAACAC CACCACCTGG
TGGGACAACA CCAGCGCCCG CCACGTCGGC TACCGGCCGC AGGACAGCTC GGAGCGCTTT
CGCGCCAAGG TCGAAGCGGC CGACCCGAAA CCCGACCTGA GCGACCCGGC CGTGATCTAC
CAGGGCGGCC CGTTCGTGCG CACCGGCCCG TTCGACTGA
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| Protein sequence | MPSHPTPLRF DRLLLTGAAG GLGRELRTRL KAYCDVLRLS DISDLGAAAA GEELMPAPLE
DAAAVHALLA GVDAVVHLGG VSTEQPWQPI LQANIIGTYN LYEAARKHGV KRVVFASSNH
VTGFYRQDEV VSPKDPMRPD GLYGLSKAFG ENLAQFYFDR YGIETVSVRI GSSFPEPKNR
RMLATWMSFD DLERLVMAAL TAPVIGHSVI YGMGDNTTTW WDNTSARHVG YRPQDSSERF
RAKVEAADPK PDLSDPAVIY QGGPFVRTGP FD
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