Gene Lcho_1100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1100 
Symbol 
ID6160593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1173563 
End bp1174573 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content66% 
IMG OID641663854 
Producturate catabolism protein 
Protein accessionYP_001790134 
Protein GI171057785 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID[TIGR03212] putative urate catabolism protein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.270076 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCCAG CCACCCCCGA CAGCGGCGCC GGCCGGCCCG CCACGAATGC CGCATCGCCC 
GTCCTGTCTG CTGCGCGCTA CCCGCGCGAC CTGCGCGGCT ACGGCCGCGA AGTGCCGCAC 
GCACAGTGGC CCGGCCATGC GCGCATCGCC GTGCAGTTCG TGCTGAACTA CGAAGAAGGC 
GGCGAGAACA GCGTGCTGCA CGGCGACGCC GGCAGCGAGC AGTTCCTGTC GGAGATGTTC 
AATCCGCCCG CCTTTGCGGC GCGCCACCTG AGCATGGAAG GCATCTACGA ATACGGCGCG 
CGGGTGGGCG TGTGGCGGCT GCTGCGCGAG TTCGAGAAAC GCGGCCTGCC ATTGACCGTG 
TTCGGTGTCT CGATGGCACT CGAGCGCTGC CCCGAAGTGA CCGCCGCATT CGTCGAACTG 
GGTCACGAGA TCGCCTGCCA CGGCTGGCGC TGGATCCACT ACCAGAACAT GCCCGACTCC 
GAAGAGCGCG AGCACATGGC GCGCGGCATG GAGATCATCG AGCGCCTGAT CGGCGAGCGG 
CCGCTGGGCT GGTACACCGG GCGCGACAGC CCGAACACGC GACGGCTGGT GGCCGACCAT 
GGCGGCTTCG CCTATGACAG CGACTATTAC GGCGACGATC TGCCGTTCTG GCTCAACGTG 
CGCAAGAGCG ACGGGTCATT GGCGCCGCAG TTGATCGTTC CCTACACGCT GGACACCAAT 
GACATGCGCT TTGCGTTGCC GCAGGGGTTC AGCCATGGGG ACGAGTTCTT CGAGTATCTG 
CGCGATTCGT TTGACGTCCT TTACGCCGAA GGAGACGAGC GGCCGGCGAT GCTCAACATC 
GGCATGCATT GCCGTCTGTT GGGGCGGCCG GGTCGGATGC GGGCCTTGCA GCGGTTTCTC 
GATCATGTGC AGGCACATGA CAGGGTCTGG GTGACCCGCC GCATCGACAT CGCCCGGCAT 
TGGCAGAGGG TGCATCCGTT CGATGCGCAG TCGGCTTTCG TGTGGGAGTG A
 
Protein sequence
MNPATPDSGA GRPATNAASP VLSAARYPRD LRGYGREVPH AQWPGHARIA VQFVLNYEEG 
GENSVLHGDA GSEQFLSEMF NPPAFAARHL SMEGIYEYGA RVGVWRLLRE FEKRGLPLTV 
FGVSMALERC PEVTAAFVEL GHEIACHGWR WIHYQNMPDS EEREHMARGM EIIERLIGER 
PLGWYTGRDS PNTRRLVADH GGFAYDSDYY GDDLPFWLNV RKSDGSLAPQ LIVPYTLDTN 
DMRFALPQGF SHGDEFFEYL RDSFDVLYAE GDERPAMLNI GMHCRLLGRP GRMRALQRFL 
DHVQAHDRVW VTRRIDIARH WQRVHPFDAQ SAFVWE