| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1082 |
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| Symbol | |
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| ID | 6161521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1151306 |
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| End bp | 1154968 |
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| Gene Length | 3663 bp |
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| Protein Length | 1220 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641663836 |
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| Product | histidine kinase |
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| Protein accession | YP_001790116 |
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| Protein GI | 171057767 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGCGT CCAACCCCTC CATGTCCCTG CCGCTGCCGG CCGCGCCCGA TTCGAACGCG
GCGCCCGAGC CCTTGTCGCC TGAAGCACCG GCGGCGCCGC AGCGTGTCAT CAAGGTCCGG
CGCGACTACA ACAGCTGGGT CGCCAGCGAG ACCAAGGAGG ACTACGCCTT GCGTTTCGCG
CCGCGCTCGT TCCGGCGCTG GAGCGAATGG CGGGTGGCCA ACACGGCGCT CGGCGGCGCC
TCGTCGTTCC TGGTGCTGGA GGCGGTGGGC GCCACGCTGC TGGTGCAGTA CGGCTTCGTC
AACGCCGCCT GGGCGATCCT GGCCACCGGG CTGGTGATCT TCCTGGCCGG GCTGCCGATC
AGCTACTACG CCGCGCGCTA CGGCCTCGAC ATGGACCTGC TGACACGCGG CGCCGGTTTC
GGCTACATCG GCTCGACGCT GACCTCGCTG ATCTACGCCA GCTTCACCTT CATCTTCTTC
GCCCTTGAAG CGGCGGTGAT GGCCTATGCG CTCGAACTCG CGTTCGACAT CCCGCCCGCC
TGGGGCTACC TGGCCTGCGC GCTGGTGGTG ATCCCGCTGG TCACGCACGG CGTCACGCTG
ATCAGCCGGC TGCAGGTCTG GAGCCAGCCG CTGTGGCTGG TGATGCTGGT GCTGCCGTAT
GTCTACGTGT TCGACCGCAA CCCCGGCGTG CTCGACGAAC TGGTGACCTA CGGCGGCGAG
CACGGCATCA CCGGCTTCGA CGGGCTGGCC TTCGGCGCGG CCATGACGGT GGGCATCGCG
CTCATCACGC AGATGGGCGA GCAGGCCGAC TACCTGCGGT TCATGCCCGA ACGCCGGCCG
GGTCGGCGCG GGTCGTGGTG GCTGGGCACG CTGGTGGGGG GCTCGGGCTG GGTCATCCCG
GGGGTGCTGA AGATGCTCGG CGGCGCGCTG CTGGCGTACC TGGCGATCAG CCACATGGTG
CCGCTCGACC GCGCGGTCGA CCCGAACCAG ATGTACCTGG CGGCCTACGA GTACGTGTTC
CCGAACTACG GCTGGGCGGT GGCGGCCACG GCGCTGTTCG TGGTGGTGTC GCAGCTCAAG
ATCAACGTCA CCAACGCCTA CGCCGGCTCG CTGGCCTGGA GCAACTTCTT CTCGCGGCTG
GCGCACAGCC ACCCGGGGCG GGTGGTGTGG ATGCTGTTCA ACATCCTGAT CGCGCTGGTG
CTGATGGAGC TCGACGTGTT CCAGGCGCTC GGCGGCGTGC TGGGCCTCTA CAGCAACCTG
GCGATCAGCT GGATCATGGC GGTGGTGGCC GATCTGGTGA TCAACAAGCC GCTCGGCCTG
TCGCCCAAGG GCATCGAGTT CCGGCGCGCC TATCTGTACG ACATCAACCC GGTCGGCGTG
GGTGCGATGG TGGCGGCGTC GCTGCTGTCG GTGGCGGCCT ACCTCGGGCT GTTCGGCGCG
ATGGCGCAGG CCTGGTCGGC GCTGATCGCG CTGGTCACCG CCTTCATCGC CTCGCCGCTG
ATCGCCTGGG CCACCCGCGG GCGCTACTAC CTGGCGCGCA CGCCCGAGGT GCCGGTCGGG
CAGGGCTGCG CGGGCGTCGT GATCCCGATC CGGCCTGTGG TCGAAGGCCC GGGCCGCTAC
GTCCGTCTGG GCCAGGGTCC GAGTGCTGAC GGCGCGCTGC AGCTGGCGGT GTGCTGCATC
TGCGAGCGCG AATACGAGTG CGACGACATG GCCGGCTGTC CGGCCTACGG CGGGCCGATC
TGCTCGCTGT GCTGCACGCT CGACGCCCGC TGCAACGACC TGTGCAAGCC GCACGCGCGC
CTGTCGGTGC AATGGAGCGC GGCCTTGCAG CGCCTGCTGC CGAGCCGCGT CTGGCCTTAT
CTGGACAAGG GCCTGGGCCA TTTCGTGCTG CTGATGCTGG TCGTCACGCC GCTGATGGCG
CTGATGTTCG GCGTGCTGTT CCACCAGGAG CTGCGCTCGC TCGCCGCGCG CGGCCTGCAG
GAGGACGCCT TCCTGTGGCC GGTGCTGGCC GAGGGCCTCA AGTCCGGTTT CATCAAGGCC
TACGCCACGC TGCTGCTGAC CGCCGGCGTG GTCGCCTGGT GGCTGGTGCT GGCGCACAAG
AGCCGGCTGG TGGCGCAGGA AGAATCGAAC CGCCAGACCC AGGCGTTGAA CGAGCAGGCG
CAGGCGCTCA ACGAGCAGGC GCTCGCACTC AAGCGCGAGA TCGAATCGCA CCGCCAGACC
GACCTGCAGC TGCAGGAGGC CAAGCGCGTG GCCGACGCCG CCAACCAGGC CAAGAGCCGC
TACATCACCA GCATCAGCCA CGAGCTGCGC ACGCCGCTGA ACTCGATCCT CGGCTACGCG
CAACTGCTCG AGGAAGACGA CGCCATGCCG GCGCACCGCA AGCAGGCGGT CAGCGTGATC
CGGCGCGGTG GCGACCACCT GCTGTCGCTG ATCGAGGGCA CGCTCGACCT GGCGCGCATC
GAGAGCGGCA AGCTCGCGCT GGCGATCAAG CCGATGCGTT TTGCCGACGC GCTGCACGAG
ATGGCGCACC TGTTCGCGCT GCAGGCCGCC GCCAAGGGCA TCGGCTTTCG CAGCGAGTTC
GACCCCCACC TGCCCGAGGC GGTGCGCGCC GACGAGAAGC GGCTGCGCCA GATCCTCATC
AACCTGCTGG GCAACGCGGT CAAGTTCACC GTCTCCGGCG ACGTGATCCT GCGGGTGCAG
TACGCCCGCG AGATCGCCCG CGTCGAGATC ATCGATTCCG GCCCCGGCAT GGACGCGGCC
GAGCTCGAGC GGGTGTTCGA GCCCTTCGTG CGCGGCTCCT CGGCCGGCGC CACCGCGGGC
GGCGGCACCG GCCTGGGCCT GACCATCAGC CGCATGCTGT GCGACCTGAT GGGCGGCGAG
ATGACGGTGG AAAGCACGCC CGGCGTGGGC AGCACCTTCC GGCTCAAGCT CTTCCTGCCG
GCGGTGCACG GCAGCCGCGC CGAGCACAAG ATCAGCCCGC CCAACCGCAG CGGCTACGAA
GGGCCGCGCC GGCGCATCCT GGTGGTCGAC AACGAGGAGG CCGACCGCGG CCTGCTGCTC
AGCGTGCTCG AACCGCTGGG CTTCGAGCTG CTTCAGGCGG CCAGCGGCGA GGACTGCCTG
GCGCTGCTGC AGGGCCTGCC CGAAGCAACC CGCCCCGACG CGATCTTCAT GGACCTGGCG
ATGCCCGGCA TCGACGGCTG GGAGACGCTG CGGCGCATCC GCGCGCTCGG CCTGAGCGAG
GCCGGCGCGG CGATCGTGTC GGCCAATGCC TTCGATCAGG CGCTGGAAAA CGACGTCGGC
ATCACGCCGG CCGATTTCTT CGTCAAGCCG GTGCGGGTGC CCGACCTGCT CGACTGGCTC
GGCCAACGCC TGCGCCTCGC GTGGATCGAG GGCGCGCGCG CGCCGGTGCC GCCGTCCGCG
CCGTCGGGCC CGCCGGGCGC CGCCGCGTGG GTGCTGCCGC CGGCGGCGCT GCTGCGCGAG
CTCGACGAAC TGGCCACGCT CGGCTACCAG CGCGGCATCC TGCGCAAGCT CGACGAGATC
GAACGCGGCC ATGCCGACTG CCGCGGCTTC GTCGACCACC TGCGCCAGCT GGCCCGGCAG
TTCCAGCTTG ATACCCTCGC GGCCCTGCTG CGCCGCGCCC TGGATGAACA GCCCCATGCT
TGA
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| Protein sequence | MSASNPSMSL PLPAAPDSNA APEPLSPEAP AAPQRVIKVR RDYNSWVASE TKEDYALRFA
PRSFRRWSEW RVANTALGGA SSFLVLEAVG ATLLVQYGFV NAAWAILATG LVIFLAGLPI
SYYAARYGLD MDLLTRGAGF GYIGSTLTSL IYASFTFIFF ALEAAVMAYA LELAFDIPPA
WGYLACALVV IPLVTHGVTL ISRLQVWSQP LWLVMLVLPY VYVFDRNPGV LDELVTYGGE
HGITGFDGLA FGAAMTVGIA LITQMGEQAD YLRFMPERRP GRRGSWWLGT LVGGSGWVIP
GVLKMLGGAL LAYLAISHMV PLDRAVDPNQ MYLAAYEYVF PNYGWAVAAT ALFVVVSQLK
INVTNAYAGS LAWSNFFSRL AHSHPGRVVW MLFNILIALV LMELDVFQAL GGVLGLYSNL
AISWIMAVVA DLVINKPLGL SPKGIEFRRA YLYDINPVGV GAMVAASLLS VAAYLGLFGA
MAQAWSALIA LVTAFIASPL IAWATRGRYY LARTPEVPVG QGCAGVVIPI RPVVEGPGRY
VRLGQGPSAD GALQLAVCCI CEREYECDDM AGCPAYGGPI CSLCCTLDAR CNDLCKPHAR
LSVQWSAALQ RLLPSRVWPY LDKGLGHFVL LMLVVTPLMA LMFGVLFHQE LRSLAARGLQ
EDAFLWPVLA EGLKSGFIKA YATLLLTAGV VAWWLVLAHK SRLVAQEESN RQTQALNEQA
QALNEQALAL KREIESHRQT DLQLQEAKRV ADAANQAKSR YITSISHELR TPLNSILGYA
QLLEEDDAMP AHRKQAVSVI RRGGDHLLSL IEGTLDLARI ESGKLALAIK PMRFADALHE
MAHLFALQAA AKGIGFRSEF DPHLPEAVRA DEKRLRQILI NLLGNAVKFT VSGDVILRVQ
YAREIARVEI IDSGPGMDAA ELERVFEPFV RGSSAGATAG GGTGLGLTIS RMLCDLMGGE
MTVESTPGVG STFRLKLFLP AVHGSRAEHK ISPPNRSGYE GPRRRILVVD NEEADRGLLL
SVLEPLGFEL LQAASGEDCL ALLQGLPEAT RPDAIFMDLA MPGIDGWETL RRIRALGLSE
AGAAIVSANA FDQALENDVG ITPADFFVKP VRVPDLLDWL GQRLRLAWIE GARAPVPPSA
PSGPPGAAAW VLPPAALLRE LDELATLGYQ RGILRKLDEI ERGHADCRGF VDHLRQLARQ
FQLDTLAALL RRALDEQPHA
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