Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1063 |
Symbol | |
ID | 6162788 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1133771 |
End bp | 1134871 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641663817 |
Product | diguanylate cyclase |
Protein accession | YP_001790097 |
Protein GI | 171057748 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 65 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAGCACG CATGGCGGCG CTGGCTGGCG CCCCCGGCCG TCGAGGGTGA CGAGGACAAG CGCCGGCGTG CCGCCGTGGT CAACACCGTC GTGCTCGGCA GCATCGCCTT CATGCTGATC GTCCTGCTCG GCATGCTCCT GGGCGGCAAG GCCCCCCGGA GCGTCCTCTG GATGGATGTC GGGCTGCTGG CCGCCTATGT GCTGATGCAC CGGCTGCTGC ATCGCGGTCA TGTCGGGCTG GCGGCGATGG GCCTGACACT GATCGGTTTC ACCGGCCTGA CCCTCATCAA CATGCGCCTG GGCACCATCC GCACGCCCAC GGCCTCGATC TACCTCTTCA TCGTGCTGAT GGCGGGAGCC GTCTTCCAGC TCCGTGGGCT GCTGACCGCA GCAGCCGCCA GTTCCCTGGC GGTGCTGGGC CTGATCCAGG CTGAAAACGC CGGCCTGCTG CCGCGTCCGG ACTACTCGGT CGGACTGATG CAGTGGGTGA CCTACACCGC CTTGTTCGGG CTGGCGTCGT TCCTGACCTA CCAGGGCAAC CAGGTCGTCC GCCGCGCGCT GGCGCGCGCC GAAGCCGAAA TCGAGCAGCG CAAGCTCGTC GAGGCCGAAC TGTCGCGCAT CGCCATCACC GACGCGCTGA CGGGCGTCTG GAACCGGCGT CATTTCGAGC AGACCATCGG CGCCGAGCGC GCCAAGGCGC AGCGCCATCA CACGCCGCTG TCGCTGCTGT TGTTCGATGT CGATCATTTC AAGGCGCTCA ACGACCAGTT CGGCCACCAG GCGGGCGACC AGGTGCTGAC CGAGCTGGCA CGGCTGGTCG GCCGGTCGCT GCGTGACGGC GACGTGCTGG CGCGCTGGGG CGGCGAGGAG TTCGCCGTCA TCCTGCACCA CTGCCCGGCG GCCGACGCGC TGCGGCTGGC CGAGAAGCTG CGCGGCCTGG TTGCCGGCCA TGCCTTCGAC CGCGTCGGCA CGGTGACCGC CAGCTTCGGC GTGGCCGAAC TGCAGCCGGA CGAGACGCTC GACGCCTGGT TCCGGCGCGT CGACCTCGCG CTCTACGCGG CCAAGTCCGG CGGCCGCAAT GCCGTGCGCC TGGGTGCGTG A
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Protein sequence | MKHAWRRWLA PPAVEGDEDK RRRAAVVNTV VLGSIAFMLI VLLGMLLGGK APRSVLWMDV GLLAAYVLMH RLLHRGHVGL AAMGLTLIGF TGLTLINMRL GTIRTPTASI YLFIVLMAGA VFQLRGLLTA AAASSLAVLG LIQAENAGLL PRPDYSVGLM QWVTYTALFG LASFLTYQGN QVVRRALARA EAEIEQRKLV EAELSRIAIT DALTGVWNRR HFEQTIGAER AKAQRHHTPL SLLLFDVDHF KALNDQFGHQ AGDQVLTELA RLVGRSLRDG DVLARWGGEE FAVILHHCPA ADALRLAEKL RGLVAGHAFD RVGTVTASFG VAELQPDETL DAWFRRVDLA LYAAKSGGRN AVRLGA
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