| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1063 |
|---|
| Symbol | |
|---|
| ID | 6162788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1133771 |
|---|
| End bp | 1134871 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641663817 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001790097 |
|---|
| Protein GI | 171057748 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAGCACG CATGGCGGCG CTGGCTGGCG CCCCCGGCCG TCGAGGGTGA CGAGGACAAG
CGCCGGCGTG CCGCCGTGGT CAACACCGTC GTGCTCGGCA GCATCGCCTT CATGCTGATC
GTCCTGCTCG GCATGCTCCT GGGCGGCAAG GCCCCCCGGA GCGTCCTCTG GATGGATGTC
GGGCTGCTGG CCGCCTATGT GCTGATGCAC CGGCTGCTGC ATCGCGGTCA TGTCGGGCTG
GCGGCGATGG GCCTGACACT GATCGGTTTC ACCGGCCTGA CCCTCATCAA CATGCGCCTG
GGCACCATCC GCACGCCCAC GGCCTCGATC TACCTCTTCA TCGTGCTGAT GGCGGGAGCC
GTCTTCCAGC TCCGTGGGCT GCTGACCGCA GCAGCCGCCA GTTCCCTGGC GGTGCTGGGC
CTGATCCAGG CTGAAAACGC CGGCCTGCTG CCGCGTCCGG ACTACTCGGT CGGACTGATG
CAGTGGGTGA CCTACACCGC CTTGTTCGGG CTGGCGTCGT TCCTGACCTA CCAGGGCAAC
CAGGTCGTCC GCCGCGCGCT GGCGCGCGCC GAAGCCGAAA TCGAGCAGCG CAAGCTCGTC
GAGGCCGAAC TGTCGCGCAT CGCCATCACC GACGCGCTGA CGGGCGTCTG GAACCGGCGT
CATTTCGAGC AGACCATCGG CGCCGAGCGC GCCAAGGCGC AGCGCCATCA CACGCCGCTG
TCGCTGCTGT TGTTCGATGT CGATCATTTC AAGGCGCTCA ACGACCAGTT CGGCCACCAG
GCGGGCGACC AGGTGCTGAC CGAGCTGGCA CGGCTGGTCG GCCGGTCGCT GCGTGACGGC
GACGTGCTGG CGCGCTGGGG CGGCGAGGAG TTCGCCGTCA TCCTGCACCA CTGCCCGGCG
GCCGACGCGC TGCGGCTGGC CGAGAAGCTG CGCGGCCTGG TTGCCGGCCA TGCCTTCGAC
CGCGTCGGCA CGGTGACCGC CAGCTTCGGC GTGGCCGAAC TGCAGCCGGA CGAGACGCTC
GACGCCTGGT TCCGGCGCGT CGACCTCGCG CTCTACGCGG CCAAGTCCGG CGGCCGCAAT
GCCGTGCGCC TGGGTGCGTG A
|
|---|
| Protein sequence | MKHAWRRWLA PPAVEGDEDK RRRAAVVNTV VLGSIAFMLI VLLGMLLGGK APRSVLWMDV
GLLAAYVLMH RLLHRGHVGL AAMGLTLIGF TGLTLINMRL GTIRTPTASI YLFIVLMAGA
VFQLRGLLTA AAASSLAVLG LIQAENAGLL PRPDYSVGLM QWVTYTALFG LASFLTYQGN
QVVRRALARA EAEIEQRKLV EAELSRIAIT DALTGVWNRR HFEQTIGAER AKAQRHHTPL
SLLLFDVDHF KALNDQFGHQ AGDQVLTELA RLVGRSLRDG DVLARWGGEE FAVILHHCPA
ADALRLAEKL RGLVAGHAFD RVGTVTASFG VAELQPDETL DAWFRRVDLA LYAAKSGGRN
AVRLGA
|
|---|
| |