| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1038 |
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| Symbol | |
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| ID | 6163119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1108537 |
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| End bp | 1110003 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641663792 |
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| Product | integrase catalytic region |
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| Protein accession | YP_001790073 |
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| Protein GI | 171057724 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4584] Transposase and inactivated derivatives |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 77 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCGCAGC TCTCGCACGA GCAGATCGCC AAGGCGCTCA ACATCTCCAA GGGCGTCGTC
TCGAAGTACG TCGGCCTGGC CAACAACGCC GGTCTGGACT GGGAGGCCGC ACAGGCGCTC
GACGAGCGCC AACTCACGGT CTTGCTGCTG CCACGCGCCG CGGCGGCCGG TCGCTTCGTC
GAGCCCGACT GGGCCGCCGT GCACCGCGAG CTCGACCGCA AGGGCGTCAC CCTGGTGCTG
TTGTGGCAGG AGTACCGGGC CGCGCATGCC GAGTGCCGCA CCTGGGGCTA CACGCAGTTC
TGCGCGCACT ACAAGGACTT CGTCGCCCGC CTGAAGCGCT CGATGCGCCA GCACCGGCGC
GCCGGCGAGA AGCTGTTCAT CGACTTCGCG GGATCGACCA TCGCGCTGGT GGACGGCAGT
CGCGCGCAGG TCTTCGTGGC GGCGATGGCC GCGTCGAGCT GCGTGTTTGC CTGCGCCACG
CTGGCGCAGC GCCTGGAGGA CTGGATCGAA GGCATCGTGC GCGCGTTGGC CTTCTACGGC
GGGGTGCCTC AGCTCATCGT GCCGGACAAC CCGCGTGCGC TGATCGCCGA GCCCGACCGC
TACGAGCCAC GCGCCAACGC CACCGTGCAG GACCTGTGCC GCCACTACGG ATGCTCGGTG
CTGCCGGCGC GACCGCGTTC ACCCAAGGAC AAGGCCACGG CGGAGAGCGC CGTCCAGGTC
GTGACCCGAT GGGTGCTGGC GCGCCTGCGG CATCAGACGT TCGCGACGGT GGCCGAGGTC
GATGCCGCGA TCGCCGCGCT GTTGCCGTCG GTCAACGAGC GGCCCTTCCA GCGGCTCGCC
GGCAGCCGCG CCAGCGTCTT CGCCGAGCTG GACGCGCCGG CCCTGATGCC GCTGCCGGCG
CAGCGCTACG AGCTCGCGCG CTTCAAGACG GTCAAGGTCC ACATCGACTA CCACGTCGAG
ATCGAGGCCC ACCGCTACTC CGTGCCGCAC GCCCTGGTCG GACAAGCGCT GGAGGCACGT
CTGACTCGGG CCTGCGTTGA GCTGCTGTTG CGCGGTCAGC GAGTGGCCAG CCACGCCCGC
AACGAACGCC GCGGCGGCTA CACCACCGTC GACGCCCACA TGCCCGCGGC GCACCGCGCC
CACAAGGAAT GGACCCCCGA TCGCCTCATC GAATGGGGCC AGCGCATCGG CGTCTCGACC
GGCGAGGTCG TCACCCGGCA GCTGCAGCTG TTCAAGCATC CCGAGCACGG CTACCGCTCC
TGTCTGGGCC TGCTGAGCCT GGCCAAGCGC TACGGCGCGG CTCGCCTGGA GGCGGCCTGC
GAGCGCGCCC TGGTCCTGGG CACCGTCAAG TACCGCCACG TGCGCGATCT GCTGGCCAAC
AACCGCGATC GGCTCCAGAA CCCCGATCAG TCCGACTGGG TCAGCCCGAC GCACGCCAAC
GTGCGTGGCC CCGGCTACTA CCAATGA
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| Protein sequence | MSQLSHEQIA KALNISKGVV SKYVGLANNA GLDWEAAQAL DERQLTVLLL PRAAAAGRFV
EPDWAAVHRE LDRKGVTLVL LWQEYRAAHA ECRTWGYTQF CAHYKDFVAR LKRSMRQHRR
AGEKLFIDFA GSTIALVDGS RAQVFVAAMA ASSCVFACAT LAQRLEDWIE GIVRALAFYG
GVPQLIVPDN PRALIAEPDR YEPRANATVQ DLCRHYGCSV LPARPRSPKD KATAESAVQV
VTRWVLARLR HQTFATVAEV DAAIAALLPS VNERPFQRLA GSRASVFAEL DAPALMPLPA
QRYELARFKT VKVHIDYHVE IEAHRYSVPH ALVGQALEAR LTRACVELLL RGQRVASHAR
NERRGGYTTV DAHMPAAHRA HKEWTPDRLI EWGQRIGVST GEVVTRQLQL FKHPEHGYRS
CLGLLSLAKR YGAARLEAAC ERALVLGTVK YRHVRDLLAN NRDRLQNPDQ SDWVSPTHAN
VRGPGYYQ
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