Gene Lcho_1029 details

Gene Information

• Locus tag: Lcho_1029
• ID: 6159976
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1096540
• End bp: 1097103
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641663779
• Product: putative transmembrane protein
• Protein accession: YP_001790065
• Protein GI: 171057716

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 59
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCCGCG TCGATAATCC GGCGATGCAA TGTCGTTCGA TGTCCTGGGC CGCGATGGGG 
TTGACCGCCT GCCTGATGGT GGCGTGCAGC CCGACGCTCG ATTGGCGCGA TGTGCGCCTG 
GGCCCGGACA CCCGGCTGCA GTTTCCCTGC AAGCCCGATC GGCTGGAGCG CAAGCTGCCG 
CTGCTCGAAC GCGTGGCAGC GGCGCAGATG CTGGTCTGCG ACGGTGGCGG GCTGACCTGG 
TCGGCCACGG TGTTCGACCT CGGCGATCCC ACGCTGGCGC CTGCCGCGCT GCTTGAACTG 
CGTCAGCGCC TGCTCGCCAA CATGCAGGGC ACCGAAGAAG CCTCGGAGCA CGTGGCGGTG 
CCCGGCATGA CGGTGGGCAC GCTGGCGCAG CGCAGCCGCA TGCGCGGTGC GCGGCCCGAC 
GGCAGCACGA CGGTGGCGCA GGCGCTGTTC GTGGCGCGCG GCCCGCGGGT CTATCAGCTG 
GTCGTGATGG CACGCCCGGA TGCGCCCGAG CAATGGTCGG CGCAAGCGGC TGAATTTCTC 
GATGCCTTGA GTTGGCGGAA CTGA 

 

Protein sequence

MTRVDNPAMQ CRSMSWAAMG LTACLMVACS PTLDWRDVRL GPDTRLQFPC KPDRLERKLP 
LLERVAAAQM LVCDGGGLTW SATVFDLGDP TLAPAALLEL RQRLLANMQG TEEASEHVAV 
PGMTVGTLAQ RSRMRGARPD GSTTVAQALF VARGPRVYQL VVMARPDAPE QWSAQAAEFL 
DALSWRN