Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1016 |
Symbol | |
ID | 6159861 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1085026 |
End bp | 1086756 |
Gene Length | 1731 bp |
Protein Length | 576 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641663766 |
Product | flagellar M-ring protein FliF |
Protein accession | YP_001790052 |
Protein GI | 171057703 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAACG CCACCCTGCA GCCTCTGACA CCGAACACGG TTGCCGCCGA GGCACCGGCA CCCGGTTTCG CCGCCCGTCT CGCCGGCCTG CCCCTGGGCC GCAAGCTGGC GCTGGCCGGC GGCGTGCTGG CGCTGATCGG CCTGCTGGCG ATGGCGGTGT TCTGGAACAC CGGCAACAAC GACAAGGTGC TGTTCGCCAA TCTGTCGGAC AAGGACGGCG GCGCCATCGT CGCCCAGCTG ACCCAGATGA ACGTGCCCTA CAAGTTCACC GAAGGCGGCA CGGCGATCCT GGTGCCGGCC GAGAAGGTGC ACGACGTGCG CCTGAAGCTG GCCCAGGCCG GCCTGCCCAA GGGCTCGACG GTGGGTTTCG AACTGATGGA CAACGCCCGC TTCGGCACCA CCCAGTTCCA GGAACGCCTG AACTTCCAGC GCGGCCTCGA GGGCGAGCTG GTGCGCTCGA TCACGGCGCT GTCGGCGGTT GAGGCGGCGC GTGTGCACCT GGCGCTGCCG AACCAGAACG GCTTCTTCCG CGACCAGCAG AAGCCCAGCG CCAGCGTGCT GCTGACGCTG CACCCGGGCC GCACGCTCGA CCGCGCCCAG CTCGCCGGCA TCGTGCACCT GGTGTCGGCC AGCGTGGCCG AGCTCAACCC GAAGGCGGTC AGCGTGCTCG ACCAGAGCGG CAGCCTGCTG GCCGGCCCGC CCGAAGGCAT GGCCGGCGCC GCCGGCGGCA CCAACGGGCT CGACGCGCAG CAGCTGCAGT ACGTCAACCA GATCGAAACC GTCTACACCA AGCGCATCCT CGACATCCTG GAACCCGTGC TCGGGCGCGA CAACCTGCGC GCCCAGGTCA GTGCCGAGAT CGATTTTTCG CAGACCGAAT CGACCTCCGA AGAGTTCAAG CCCAACCAGG GCGACGCGCC GGCCGCCGTG CGCAGCGCCC AGTCGACCGA GCAGAGCAAC CCCGGCGCGG CCATGCCCGC CGGCGTGCCG GGCGCGCAGA GCAACCAGCC GCCCACGCCG GCCACCGCGC CGATCAACGG CCAGGCCCAG CAGATGCAGG CCGCGCAAGG TGGCGTCGGC AGCAACGGCA CGGCCCGGCG CGAGGCCGTC ACCAACTACG AGGTCGACAA GACCGTGCGC GTGACACGCG CCGCCAGCGG CCAGGTCAAG CGCCTGTCGG CCGCGGTGGT GGTCAACAGC CGCAGCGTCA CCGACAAGAA GGGCAATGTC CAGGTGGTGC CGCTGACGCC CGAAGAGCTC GACAAGCTGA CCGCGCTGGT GCAGGAGACG GTCGGCTTCA GCAAGGACCG GGGCGACTCG GTCAAGGTGA TCAACGCGCC GTTCAAGGTC GACAAGCCGG TCGAGGACAC CACGCCGCTG TGGAAACAGC CCGAGGTGCA GGACATGGTG CGCACGCTCG CCCTGCCGCT GGGCCTGGCG CTGCTGGCGC TGATCATCGT GTTCGGCGCG ATCCGTCCGG CGCTCAAGGC GGCGCAACCG CCCGAGCCGG TGCAGCTGGT GGATGCGGTG GTCGACGACG CGCAGGAGCT GCCCGCCCTC GAAGGCAGCG CCGAAGAGGC CGCGCACCTG GCCGCCGGTC ACATGAACGC GCTGCCGGCG CCCGAGGACG ACGCCCAGCG CCGCCTCGAG CAGGCCCGCA AGATGGCCAA GGACAACCCC GCGGCGGTGG CCAACATCGT GCGCGGCTGG GTCAGTGGCG CCGCGGCCTG A
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Protein sequence | MDNATLQPLT PNTVAAEAPA PGFAARLAGL PLGRKLALAG GVLALIGLLA MAVFWNTGNN DKVLFANLSD KDGGAIVAQL TQMNVPYKFT EGGTAILVPA EKVHDVRLKL AQAGLPKGST VGFELMDNAR FGTTQFQERL NFQRGLEGEL VRSITALSAV EAARVHLALP NQNGFFRDQQ KPSASVLLTL HPGRTLDRAQ LAGIVHLVSA SVAELNPKAV SVLDQSGSLL AGPPEGMAGA AGGTNGLDAQ QLQYVNQIET VYTKRILDIL EPVLGRDNLR AQVSAEIDFS QTESTSEEFK PNQGDAPAAV RSAQSTEQSN PGAAMPAGVP GAQSNQPPTP ATAPINGQAQ QMQAAQGGVG SNGTARREAV TNYEVDKTVR VTRAASGQVK RLSAAVVVNS RSVTDKKGNV QVVPLTPEEL DKLTALVQET VGFSKDRGDS VKVINAPFKV DKPVEDTTPL WKQPEVQDMV RTLALPLGLA LLALIIVFGA IRPALKAAQP PEPVQLVDAV VDDAQELPAL EGSAEEAAHL AAGHMNALPA PEDDAQRRLE QARKMAKDNP AAVANIVRGW VSGAAA
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