| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0988 |
|---|
| Symbol | |
|---|
| ID | 6162179 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1056079 |
|---|
| End bp | 1056822 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641663738 |
|---|
| Product | ABC transporter-related protein |
|---|
| Protein accession | YP_001790024 |
|---|
| Protein GI | 171057675 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACGC CACAAGATCT GCTGTCCGTC AAAGACCTGC ACGCCGGCTA CGGCCGCGCC
GAGGTGCTGT CGGGCCTGAA TCTGCGCCTC GCCAAAGGCC AGGTCGTCAC CGTGATCGGC
CCCAATGGCG CCGGCAAGTC GACCACGCTG AACGCGCTGA TGGGCGTGCT GCCGGCACGC
GGCCAGCTGA TGTTCGACGG CCAGAGCCTC GCCAACACCA CGCTCGAAGA GCGCGTGATG
ATGGGCCTGG CGCTGGTGCC CGAAAAGCGC GAGCTGTTCT CGAGCATGAC GGTCGAGGAC
AACCTGGTGC TCGGCGGCTT CCGCCAGATG CGGCTGCGCA ACGCCCAGTG GCGCGACACG
CTCGACGAGG TCTACACGCT GTTCCCGCGC ATGAAGGAGC GCCGCCTGCA ACTGTCGGGC
ACGCTGTCGG GCGGCGAGCG GCAGATGCTG GCGGTCGGCC GCGCGCTGAT GAGCCGGCCC
AAGCTGCTGA TGCTCGACGA ACCCAGCCTG GGGCTGGCGC CGCTGATCGT GCGCGAGATC
TTCCGCATCA TCTCCACGCT GCGCTCGACC GGCGTCAGCA TCCTGCTGAT CGAGCAGAAC
GCCCGCGCCG CGCTCGAGGT GGCCGATTAC GGCTACGTGC TCGAAACCGG CTCGATCGCG
CTCGAAGGGC CGGCCAGCGA GCTGGCGGTC GACGCGCGGG TGATCGAAAC CTACCTCGGC
GCGCAGAAAA AAGCCGCGGC CTGA
|
|---|
| Protein sequence | MNTPQDLLSV KDLHAGYGRA EVLSGLNLRL AKGQVVTVIG PNGAGKSTTL NALMGVLPAR
GQLMFDGQSL ANTTLEERVM MGLALVPEKR ELFSSMTVED NLVLGGFRQM RLRNAQWRDT
LDEVYTLFPR MKERRLQLSG TLSGGERQML AVGRALMSRP KLLMLDEPSL GLAPLIVREI
FRIISTLRST GVSILLIEQN ARAALEVADY GYVLETGSIA LEGPASELAV DARVIETYLG
AQKKAAA
|
|---|
| |