Gene Lcho_0944 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0944 
Symbol 
ID6160225 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1007194 
End bp1007616 
Gene Length423 bp 
Protein Length140 aa 
Translation table11 
GC content61% 
IMG OID641663695 
ProductUspA domain-containing protein 
Protein accessionYP_001789981 
Protein GI171057632 
COG category[T] Signal transduction mechanisms 
COG ID[COG0589] Universal stress protein UspA and related nucleotide-binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones118 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATCC TGGTTGCTGT CGATGGCAGC GAATACACCC GCCGCATGGT CGCCTATTGG 
GCTGCCCATG ATGAATGGCT GGGGCCGGCG CACGAGTACA CCGTGCTGAC CGTGGTGCCG
ACCATTCCGC CTCGTGCTGC GGCCGTGCTC GATCGGGAAC TGCTGCAAGG CTATTACGCC
GATGAGGGCG AAAAGGTTTT CAAGCCGCTG CGCACGTTTC TCGATGCCCA GCGCATCAGC
GCGACTTTCC TCAGCAAGAC CGGTCATGTG GCCGATGCCA TCGCCAAGAC CGCCGACGAG
GGGCATTTCG ATCTGGTCAT GATGGGCTCG CACGGCCACA ACCAGCTGGG CAATCTGGTG
ATGGGCTCGG TGGCGACGCG CGTCATTGCG GCTTGCAAGA CGCCTGTTCT GCTGATTCGC
TGA
 
Protein sequence
MKILVAVDGS EYTRRMVAYW AAHDEWLGPA HEYTVLTVVP TIPPRAAAVL DRELLQGYYA 
DEGEKVFKPL RTFLDAQRIS ATFLSKTGHV ADAIAKTADE GHFDLVMMGS HGHNQLGNLV
MGSVATRVIA ACKTPVLLIR