Gene Lcho_0935 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0935 
Symbol 
ID6159738 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp998522 
End bp999187 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content71% 
IMG OID641663686 
Producttransaldolase 
Protein accessionYP_001789972 
Protein GI171057623 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00875] fructose-6-phosphate aldolase, TalC/MipB family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones125 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCGAT TCCACCTCTA TCTCGACAGC GCCGATCTGG GCGAGTTGCG GCGCTGTCTG 
CCGCATCCGG TCGTGCATGG CGTGACCACC AATCCGACCT TGCTGCGGCG CGCGGGTGTC 
CGGCGGGCCG GGTTGCCGGA CCTGCTCGGC GAGATGCTCG CGATGGGCGC CCGCCAGGTT 
CAGGCGCAGG TCCAGAGCCA GGATGCGCCG GGCATGCTCG ACGACGCCCA TGACCTGCTG 
CGGCACTTCG CGCCCGGGCA GCTGGTGATC AAGATCCCGG CCACGCGCGA AGGCCTGCGC 
GCAGGCGCGC AACTGGTGGC ACGCGGCGTG CCGGTCACCT ACACCGCCGT CTATGCGCTG 
GAGCAGGTGC ACTTTGCGGC CCAGCTCGGT GCCAGCTATG CCGCGCCGTA CCTCGGGCGA 
CTCGACGACT CAGGCGTCGA CGGCCTCGCC CTGATCGCCC GGATGCAGGC CTTGCTGCAG 
TCCTGCGGCG GCGCGACGCG GCTGCTGGTG GCCAGCGTCC GCGACCGCGA GGCCTACCTG 
AACCTGCTGC GACTGGGCGT GGGCGCCATC ACCATCCCGC CCCGGCTGCT GGGCGAGCTG 
CTCGACCATC CCGCCACCCT GCAGGCCGAG CAGGCGTTCC TCGCCGACGC TCAGGCCTCG 
GACTGA
 
Protein sequence
MDRFHLYLDS ADLGELRRCL PHPVVHGVTT NPTLLRRAGV RRAGLPDLLG EMLAMGARQV 
QAQVQSQDAP GMLDDAHDLL RHFAPGQLVI KIPATREGLR AGAQLVARGV PVTYTAVYAL 
EQVHFAAQLG ASYAAPYLGR LDDSGVDGLA LIARMQALLQ SCGGATRLLV ASVRDREAYL 
NLLRLGVGAI TIPPRLLGEL LDHPATLQAE QAFLADAQAS D