| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0897 |
|---|
| Symbol | |
|---|
| ID | 6162361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 961895 |
|---|
| End bp | 963556 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641663647 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001789934 |
|---|
| Protein GI | 171057585 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACACCA AGACCAAAGC GAAGCACAAC ATTGGCACCA CGCATCGGGA GGTGCTGGGC
TGGGTCAAGA AAGCGGCGGC GGGTGACGAG TTCCGGGCCG CCAAAGGGCT GTACCTGCGC
AAGACCGAGG GTGGCGCGTT CTGGGTCTAC CGGTACGCAT CACCTGTCAC GGGCAAGCAG
GTACGCGCCC AGCTTTGGGC GGATGACGAA CGTGGCGTGG TCGGGTTCCC CGATGCCTCG
CTGGAAGAAG CGACCACTCG CGCGGCCGTG CTGCGAGCCA AGGTGGCCGA CGGTATCGAT
CCGGTGCTGA CGGCAGAACA GGCAAGGATG GCCCATGCAG AAGCCCAAGC GCTTGACCGC
CAGCGCATCG CCGACGAACA GCGCCAACGC GAGCAAGCCG CCCAGGCCGC AACACTCGCC
CAAGCTCGCC GGCTGACCGT GCGGCGCCTG TTCGAGGACT GGCGGGCGGC CGACCTGCAG
CCGCGCGTCC GGGCCGATGG CAAGCGCACC GGCCGCGTCG ATGGCGGGCA ATACGTGCTG
GAACAGTTCA CCCGGCATGT GTTCCCGGCC ATCGGCGAGA TGGCAGCGGA GGACGTGCGC
AAAGCAGATC TGCTGTCGCT GCTGGACGCT CAGAAATCGG CCGGCAAGAT GCGCACAGCC
AATGTGCTGC TGGCCGACCT CAAGCAGATG CTCGACTTCG CCCTGGAGCG CGAGTTGATC
GCTGGCAACC CGCTCGCCAC CGTCAAGAAA AGCAAAGTCG GCGGCGCGAG CGTGGAGCGT
GACCGGGTGC TGTCCAACGA CGAGATCAAG CTCCTGGTAG CAGGAATCGC TTGTGCTCGG
ATGCACCAGC GAAGCTCGAC CGCCATCTGG CTGACACTAG CCACAGGCGT GCGTGTGGGC
GAGCTCATGG GCGCGGTGTG GGCAGACGCC CTGCCCGCTG ACCCGAAAGC CCGCAAGACC
CGCCTGGATG CACTGCAAGC ACTTTGCGAC GCCAAGGCGG TGACCGCAGC GCAGAAAAAG
CTAGCGAAGG CGGTCGAGGA CGGCGACGCC AAGAAGATTG AGCGCGTCAA ACAGCAGTTG
GCAACATACC AAGCTTTCGG CGATCCCGAG AGGGTAAAGG TCGGTGTTAT CGATGTGATT
GCCCGCAACT GGTACTTGCC GGACACCAAG AATCAGCGCG ATCACACCAT TCACTTGAGC
GACTTCGCCC TGGCGCAACT TGAGACGCTG TACGAACTGC GCGAGGTATT GACGACCTCG
ACCAGCGGAG AGTTGTCCCC TTGGGTGTTT CCGGCTACGA ACAACAGCCA GCCGGTCTGT
GTGAAGTCGT TCGGCAAGCA ACTGAGCGAC CGCCAGCGCG AGCCCGAGGC GCGCATGAGC
AACCGCACCA AGGCCACCAC GTCACTGATG CTGCCGGGGG GCAAGTGGAC GGCGCACGAC
CTGAGGCGCT CGGCGGCAAC CGTGATGGCC CGGCTGAACT TCGGGTCGGA CACGATCAAC
GAGTGCCTGA ACCACATTCA GAGCGACCGC ATGGCACGGG TCTACATCCA AGACCGGCGC
GAGGCCGATC AGGCCCGGGC GTTCGATGCA TTGGGGAAAC GACTGGCAGT TCTCGTCAAT
GACGCACCTC GCTCGCCCAC TGCCAATCCA ATGTCTGAGT GA
|
|---|
| Protein sequence | MDTKTKAKHN IGTTHREVLG WVKKAAAGDE FRAAKGLYLR KTEGGAFWVY RYASPVTGKQ
VRAQLWADDE RGVVGFPDAS LEEATTRAAV LRAKVADGID PVLTAEQARM AHAEAQALDR
QRIADEQRQR EQAAQAATLA QARRLTVRRL FEDWRAADLQ PRVRADGKRT GRVDGGQYVL
EQFTRHVFPA IGEMAAEDVR KADLLSLLDA QKSAGKMRTA NVLLADLKQM LDFALERELI
AGNPLATVKK SKVGGASVER DRVLSNDEIK LLVAGIACAR MHQRSSTAIW LTLATGVRVG
ELMGAVWADA LPADPKARKT RLDALQALCD AKAVTAAQKK LAKAVEDGDA KKIERVKQQL
ATYQAFGDPE RVKVGVIDVI ARNWYLPDTK NQRDHTIHLS DFALAQLETL YELREVLTTS
TSGELSPWVF PATNNSQPVC VKSFGKQLSD RQREPEARMS NRTKATTSLM LPGGKWTAHD
LRRSAATVMA RLNFGSDTIN ECLNHIQSDR MARVYIQDRR EADQARAFDA LGKRLAVLVN
DAPRSPTANP MSE
|
|---|
| |