| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0868 |
|---|
| Symbol | |
|---|
| ID | 6161705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 933191 |
|---|
| End bp | 934228 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641663618 |
|---|
| Product | TrbL/VirB6 plasmid conjugal transfer protein |
|---|
| Protein accession | YP_001789905 |
|---|
| Protein GI | 171057556 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3704] Type IV secretory pathway, VirB6 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACAGCT GGGTCGGTTC CCGTTTCGAC GCCATCCTCA ACAGCTACGT GATCGACGTG
ATCACCGCGC TGATGGCCGC ACTCACGCCG GTCGCGCTGT CGGCGATGAC GCTGTGGGTC
ATGCTCTACG GCTGGGCGGT GCTGCGCCAC GAGGTGTCGG AGTCGATCAC GACCTTCCTG
TGGAAGGTCT TCAAGATCGG CCTGGTGCTG GCCTTCGCGC TGCAGTCGGG CGTCTACATC
ACCCATGTGG CCGACAGCGC CAATGCGCTG GCGATGGGGG TGGCATCGAC CTTCCTGCCC
GCTGGCGTCG ACCCGGCGAC GCTGACCACG CCGTACACGC TGCTGGACCA CTTCAACGAC
GCCGCCAGCG ACCAGGCCGG CGACCTGATG AAGGAGGCCA GCCCGTTCCG GCTCGACCTG
CTGGTGGCCG CCGGGGTCTT CTCGACCGGC TCGGTCATCT TCCTGGTCAT CGGCTTGTTC
GTCGTCACGC TGGCCAAGGT CCTCCTGACC TTCGTGATCG CGGTGGGCCC GCTGTTCATC
CTCTGCTTGG CCTGGCGACC CACCGCGCGC TTCTTCGACA GCTGGCTGTC GATGCTGCTC
AACGCGGTCG TGCTGACCTG GTTCGCCTTC TTCGCGCTGG GCCTGAGCAT CGCCATCGGC
ACCGCGATCT TCAAGGCCAT CCAGGATGGC GGCGGCTTCC TCGGCGGCAC CTTCAACGTG
CTGGGCGAGG CCATGCGCTA CTGCGTGCTG ATGATCCTGA TGGCCATCCT GTGCTTCCAG
GCCCCCAGCC TGGCCTCGGC CCTGACCGGT GGCGCCGCCG TCCAGCAGGG CATCCAGATG
ATCCAGAACA CCCTGATGGT CGCGGGCCTG CGTGCTGGAT CGTCCCGGGG GGCCGGCGGG
ACCGTCGCTG GCGGTGTCGT GCGCGCTGGC ACGGGCATTC CCTTCGCCCT GGGCCGCGCC
GTGGGATCGG CCATGACCCA GGCAGCGACC ACCAGCCGTC CCGCCTACCG CCTCGCCGCG
CTGCGCGGAC GCACCTGA
|
|---|
| Protein sequence | MYSWVGSRFD AILNSYVIDV ITALMAALTP VALSAMTLWV MLYGWAVLRH EVSESITTFL
WKVFKIGLVL AFALQSGVYI THVADSANAL AMGVASTFLP AGVDPATLTT PYTLLDHFND
AASDQAGDLM KEASPFRLDL LVAAGVFSTG SVIFLVIGLF VVTLAKVLLT FVIAVGPLFI
LCLAWRPTAR FFDSWLSMLL NAVVLTWFAF FALGLSIAIG TAIFKAIQDG GGFLGGTFNV
LGEAMRYCVL MILMAILCFQ APSLASALTG GAAVQQGIQM IQNTLMVAGL RAGSSRGAGG
TVAGGVVRAG TGIPFALGRA VGSAMTQAAT TSRPAYRLAA LRGRT
|
|---|
| |