Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0808 |
Symbol | |
ID | 6162150 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 871247 |
End bp | 873448 |
Gene Length | 2202 bp |
Protein Length | 733 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641663558 |
Product | TonB-dependent receptor |
Protein accession | YP_001789845 |
Protein GI | 171057496 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 95 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGATTT TCCAGAAGCG ACCGTTGGTG GTCGCGGTGC TGGGTGCTCT GGCGGCCCAG GCGTCTTTTG TCGCGAATGC CCAGAATACC GATGCCTCGA CCCAGGATGC CGAAGTCGTG GTGACCGCCA ACAAGGTCAC CCAATCTGCA CTGAAGGTTG GCGCATCCCT TTCGGCGGTG AGTTCCGACG ACATCCGTGA AAAGGGCGTG ACCGACGCCA AGGCGCTGAC GGACCTGATG CCCAACACGC AGATCAGCCA GGCCGGCAAC AGCAGCGTGG TGGTCAACAT CCGCGGCATC GAGAACACCA ACACCACCGC CCTGGGCGAG CCGGCTGCGG CCTTTCACAT CGACGGCATC TATCTGGGAA GAATGTCGGG CGCGGGTTCC GCGTTCTTCG ACATCGAACG CGTCGAGGTT CTGCGCGGCC CACAGGGCAC GCTGTATGGC CGCAACGCCA ATGCCGGCGT CGTCAACGTC ATCACCAAGG CCCCGACCAA CAAGCGCGAA GGTTTCGTCT CGGTCGACGT GGGTAATCTC GGCCAGAAAC GTGTCGACGG TGCCTATAAC CTGCCGGTCA ATGATTCGCT GGCACTGCGC GCGGCATTTT CGACCAACCG CCGGGATGGT TATTCTGAAA CGAAGACCGC CACCAACGGT TTCACCCAAA ACCAGGACAG CGTCCACACC GATTCGTTCC GACTGCAGGG TTTGCTGAAA ATCTCGCCGC AGACCAGTCT GAATGTCTCG TACGACCAGA GCACCAACAA GACCACCGGC CCGAACTATT ACAACCTGAC CGCCGGCATT CCCGACAAGC TGGTTGATAC GGGCGTCCTG ATCCAGGGCA AGTTCAACGA CAAGGCCAGC GGTTTCAAGA CCGAGCTGAA ATCCGACCTT GGTTTTGCCA ACCTGACCTA CATCTACGGC CAGCGCAACA CCAAGAACAA GGAAGACTAC GCAACCGGAC CGCTGATCCT GCTGACCAAG TTCACTTTCG AACAGAATTC GCACGAGATC CGACTGTCCT CGAACGACAC CGCCTCACCC CTGCAGTGGG TGGCCGGCTA CTTCCAGTAC AAGGAAACCG GCAAGGACGG CCAGCTCGAC GGCAACGCAC CGTTCTACCT CTTCGGCCCC GCCCCCGGAC CGGCCCCGTT CGGTCCTGAC CAGTGCGGTG GTTTTGCTGC CTGTTATCCC GGCCTGCAGT TCCAGGATTA CCTGATCCAG AACGATTCCA AGGCGTTGTT CGGCCAAGCG ACCTACAGCC TGAACGATAC CTCCCGCGTG ATCGTCGGCG CCCGCCACAC GGCCGACGAA AAATCCCGCA ACAGCCAGCA GGTGCTGTCG TTCAGCGGCG TCGACTACAA CACGGCGACG CCGGGCAACG CGGCGACGCC CCTCTTTGGC GATGCCTCGT GGCGCAGCTC AACCTACAAG CTGGGCTATG AACTCGACAT CTCGGCCACG AAGATGCTCT ACACCAGCAT CTCGACCGGT TTCAAGTCGG GCGGCTTCAA CGACGGCGAT ACCCGCGCCG ATCCCAGCCT GATCTACGCG CCGGAGAAGA TCACCGCCTA TGAAGCGGGT CTCAATGGCA AGTTCTTCGA CAACGCCCTG CAACTCACGT CATCGGTCTT CCATTACGAC TACAGCGACA TGCAGAAGTC GGGCATCGTC AACGGACAGA GCAAGACGAC CAACACCGGC AAGGCGACTG TGGACGGCGT CGAGGTCTCC GCGCGCTACC GAGTGAGCAG CGCGGGCCGG ATCGACACCG CCCTGGGACT GCTCGAGGCG AAGTACAAGA ACTACACCAC GCCGAACGGC ACCGACTATG CGGGCAAGAA GCTCGACAAG ACGCCCACGG TCACGCTGAA CGTCGGATAC ACGCACAACT GGAACCTCGA ATCGGGCGCA CGCCTGACCG GCTACCTGGG CACCAAGTAC TCGGCGTCCT ACGTGACGAC CGATACCGGT GACGTTGCTG TCGCTCCGAC CCAGTTCACG CAGAAGGCGT ACACGAAGTC GAGCGCTTCG CTGACCTGGG CCGCCGAGGA CGATTCCATG GACGTCCAGT TCTACGTGCG CAACATCGAG AACAAGTCGC AGCTGATGGG CTCGGTGGCG TTCTTCGGTG CGAACTACGG CTACATGAGC GAGCCGCGCA CGCTGGGCGC CCGCGCCACG TTCCGCTTCT GA
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Protein sequence | MMIFQKRPLV VAVLGALAAQ ASFVANAQNT DASTQDAEVV VTANKVTQSA LKVGASLSAV SSDDIREKGV TDAKALTDLM PNTQISQAGN SSVVVNIRGI ENTNTTALGE PAAAFHIDGI YLGRMSGAGS AFFDIERVEV LRGPQGTLYG RNANAGVVNV ITKAPTNKRE GFVSVDVGNL GQKRVDGAYN LPVNDSLALR AAFSTNRRDG YSETKTATNG FTQNQDSVHT DSFRLQGLLK ISPQTSLNVS YDQSTNKTTG PNYYNLTAGI PDKLVDTGVL IQGKFNDKAS GFKTELKSDL GFANLTYIYG QRNTKNKEDY ATGPLILLTK FTFEQNSHEI RLSSNDTASP LQWVAGYFQY KETGKDGQLD GNAPFYLFGP APGPAPFGPD QCGGFAACYP GLQFQDYLIQ NDSKALFGQA TYSLNDTSRV IVGARHTADE KSRNSQQVLS FSGVDYNTAT PGNAATPLFG DASWRSSTYK LGYELDISAT KMLYTSISTG FKSGGFNDGD TRADPSLIYA PEKITAYEAG LNGKFFDNAL QLTSSVFHYD YSDMQKSGIV NGQSKTTNTG KATVDGVEVS ARYRVSSAGR IDTALGLLEA KYKNYTTPNG TDYAGKKLDK TPTVTLNVGY THNWNLESGA RLTGYLGTKY SASYVTTDTG DVAVAPTQFT QKAYTKSSAS LTWAAEDDSM DVQFYVRNIE NKSQLMGSVA FFGANYGYMS EPRTLGARAT FRF
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