Gene Lcho_0780 details

Gene Information

• Locus tag: Lcho_0780
• ID: 6160496
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 843234
• End bp: 843719
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 641663531
• Product: single-strand binding protein
• Protein accession: YP_001789818
• Protein GI: 171057469
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0629] Single-stranded DNA-binding protein
• TIGRFAM ID: [TIGR00621] single stranded DNA-binding protein (ssb)

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.0000000775761
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGCCCACG TCCACGTCAC CCAGCGTCAC GCCCACCTGG CCGGCGCCGT CAAGCTCGAC 
ACCGTCAACG GCCGCGAAGG CCCGATCGCC CGCGCGGTGC TCACCGCCAT CAGCAACAAC 
CGCCGCGGCA CTGGCGACAG CCGCAACGAA GAAGCCACCG CGATCCAGTG GACGCTGTGG 
GGCGCCCAGG CCGAGAACGC CGCGCGCTAC CTCGGCAAGG GCTCGCACGT CAACATCATC 
GGTCGGGTGC GCAACCACCG CTACGAGAAG GACGGTGAGA CCATGCACAC GATGGCCTTC 
ACGGCCGACG AGATCGACTA CCTCGACAGC CGCGCCGAGG CCGAGGCCCG CCGCGAGCGC 
GAAGGCAGCC CGGACGAGAC CGAAGCGCGC ACGCCAGCCA CCGCCGCCAG CGCCCACCCG 
AGCCGCGCCC CGCGCGCCGC GCACAAGCCC CGCAGCGACC GCCAGCCTGC CCAGGCCGCC 
GCCTGA 

 

Protein sequence

MAHVHVTQRH AHLAGAVKLD TVNGREGPIA RAVLTAISNN RRGTGDSRNE EATAIQWTLW 
GAQAENAARY LGKGSHVNII GRVRNHRYEK DGETMHTMAF TADEIDYLDS RAEAEARRER 
EGSPDETEAR TPATAASAHP SRAPRAAHKP RSDRQPAQAA A