| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0686 |
|---|
| Symbol | |
|---|
| ID | 6164094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 737358 |
|---|
| End bp | 738347 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641663437 |
|---|
| Product | putative cobalamin biosynthesis transmembrane protein |
|---|
| Protein accession | YP_001789726 |
|---|
| Protein GI | 171057377 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1270] Cobalamin biosynthesis protein CobD/CbiB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.910501 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTTT TCGCGGTCTT GCTGGCCCTC GTCATCGAAC AGTTGCGGCC CCTGCCGCAG
GGCAATCCGG TCCATGAAGG GCTGATTGCC TGGTCGCGCT GGACCGGCTT CAACTTCGAT
GCCGGCCGTG AGCACCACGC CTGGGTGGTC TGGACCGTGA CGGTCTTCGT GCCGGCGTTG
CTGGTCGGGC TGGTGCACTG GGCGCTCGAC AGCTACAGCA GCATCCTGTC GCTGGCCTGG
GATCTGGTCG TGCTCTACAT GACGCTCGGC TTTCGCCAGT TCAGCCACTA CTTCACCGAC
ATCCGGGATG CTCTCGAGCA GGGCCAGGAG GAGCGCGCCC GTGAATTGCT GCGTGCCTGG
CGCAACCTCG ACGCCAGCGA ACTGCCACGC ACCGAACTGC TGCGCCATGT GATCGAGCAC
GCGCTGCTGG CGGCGCACCG CCATGTGTTC GGCGTGTTCT TCTGGTTCGT GCTGGGCTCG
GCGCTCGGGC TCGGGCCGGT CGGTGCCGTG ATCTACCGGA TGGCCGAGTT CTGTGCCCGT
TACTGGGCCT ACAAGAGCCG CACGCTGAGC GCGCCGACCA ACGAGCGCCT GATGCTGCGT
GCGCAGCAGG CCTTCGCCCT GATCGACCAC GTTCCGGCGC GTCTGACGGC GGCAGGGTTT
GCGGTGGTCG GCAATTTCGA GGAGGCGGTC GACTGCTGGC GCCACCATGC GGGGTTGTGG
AAGCACTCCA ACGACGGCAT CCTGCTGGCG TCGGCAGCCG GCGCGGTCGG TCTGGCGCTC
GGCGGCACCC ATGCGCCCGA ACTGATGCCC AACCGCAGCC GCGGTTTCGA TGCCGGCGCC
TTGCCCGACG AGGCCGGCGC CGAAGGCAGC ACGCCCGGCG CTGCGCCGCA GCTGGCGCAC
CTGCGCGCGG TGGTCGGTCT GGTCTGGCGC TCGGTGGTGC TGTGGATGCT GCTGCTGGCG
CTGCTGTCGC TGGCCAACCT GCTCGCCTGA
|
|---|
| Protein sequence | MSFFAVLLAL VIEQLRPLPQ GNPVHEGLIA WSRWTGFNFD AGREHHAWVV WTVTVFVPAL
LVGLVHWALD SYSSILSLAW DLVVLYMTLG FRQFSHYFTD IRDALEQGQE ERARELLRAW
RNLDASELPR TELLRHVIEH ALLAAHRHVF GVFFWFVLGS ALGLGPVGAV IYRMAEFCAR
YWAYKSRTLS APTNERLMLR AQQAFALIDH VPARLTAAGF AVVGNFEEAV DCWRHHAGLW
KHSNDGILLA SAAGAVGLAL GGTHAPELMP NRSRGFDAGA LPDEAGAEGS TPGAAPQLAH
LRAVVGLVWR SVVLWMLLLA LLSLANLLA
|
|---|
| |