Gene Lcho_0682 details

Gene Information

• Locus tag: Lcho_0682
• Symbol: rimM
• ID: 6160801
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 734710
• End bp: 735294
• Gene Length: 585 bp
• Protein Length: 194 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 641663433
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001789722
• Protein GI: 171057373
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 44
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCAGCTG CTGACGAGTC GAGCTGGCCG GCCGACGTGG TGGAGGTCGC CAAGGTGATC 
GACGCCTGGG GCGTCAAGGG CTGGTTCCGT GTCCACCCCT ACGCAGCCGA TGCGCAGGCG 
GTGTTCACGT CCAGGCGCTG GTATCTGCAG GGGCCTGACA ACCGGCCGCG TCCCAAGGAC 
GCGCCGGCCT TGCCCCGGCT GCTGCACGTC ACCGAGGTCA AGGAGCACGG CGACGGCATC 
GTCGCCTGCG CGCCCGAGGT GGCCGACCGC AGCGCTGCCG AGGCACTCAA GGGTGCCCGC 
ATCTTCGTTT CACGAGCCAG TTTTCCGACC GTCGGCGACG GCGAGTACTA TTGGATCGAC 
CTGATCGGCC TGTCGGTCGT CAACCGCGAC GGCGAGTCGC TCGGCACGGT CACCGATCTC 
ATCGACACCG GCCCGCACAG CGTGTTGCGC CTCGGCTACC CGAGCGTCGA CGACAAGGGC 
GCGCCGGTCG AAGGCGAGCG GCTGATTCCG TTTGTCGCGG CCTACATCGA TTCGGTGCAG 
CTGGACCAGA AGCGCATCGT CGCCGACTGG GGCCTTGACT ACTGA 

 

Protein sequence

MAAADESSWP ADVVEVAKVI DAWGVKGWFR VHPYAADAQA VFTSRRWYLQ GPDNRPRPKD 
APALPRLLHV TEVKEHGDGI VACAPEVADR SAAEALKGAR IFVSRASFPT VGDGEYYWID 
LIGLSVVNRD GESLGTVTDL IDTGPHSVLR LGYPSVDDKG APVEGERLIP FVAAYIDSVQ 
LDQKRIVADW GLDY