| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0619 |
|---|
| Symbol | |
|---|
| ID | 6160102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 667197 |
|---|
| End bp | 668264 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641663369 |
|---|
| Product | dTDP-glucose 4,6-dehydratase |
|---|
| Protein accession | YP_001789659 |
|---|
| Protein GI | 171057310 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1088] dTDP-D-glucose 4,6-dehydratase |
|---|
| TIGRFAM ID | [TIGR01181] dTDP-glucose 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.129356 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCTCG TCACCGGCGG CGCCGGCTTC ATCGGCAGCA ACTTCGTACT CGACTGGCTG
GCCCAGTCGG ATGAACCCGT GCTCAATCTG GATGTCCTGA CCTACGCGGG CAACCTGGAA
AACCTCGCCA GCCTGCAGGG CGACGCGCGG CATGTGTTCG TGCAAGGCGA CATCTGCGAC
CGCGCCCTGA TCGACCGCCT GCTGGCCGAA CACCGCCCGC GCGCCATCGT GCATTTCGCG
GCCGAGAGCC ACGTCGACCG CAGCATCCAC GGCCCCGGCG CCTTCATGCG CACCAATATC
GAAGGCACCT ACACGCTGCT CGAAGCCGCG CGGGCGCACT GGAGTGGCCT GGACGATGCC
GCCAAGGCCG CGTTCCGCTT CCACCACGTC TCGACCGACG AGGTCTACGG CTCGCTCGGT
GCCAGCGATC CGGCCTTCAC CGAAACCAAG GCCTTCGAGC CCAACAGCCC GTACTCGGCC
AGCAAGGCCG CCAGCGATCA CCTGGTGCGT GCCTGGTTCC ACACCTACGG CCTGCCGGTG
GTCACCACCA ACTGCAGCAA CAACTACGGC CCGTATCACT TCCCCGAGAA GCTGATCCCG
CTGATGATCG TCAACGCGCT GGCCAGCAAG CCGCTGCCGA TCTACGGCGA CGGCCAGAAC
GTGCGCGACT GGTTGTACGT GTGCGACCAC GCCAGCGCGA TCCGCGCCGT GCTGGCCGGC
GGACGCCTGG GCGAGACCTA CAACATCGGC GGCTGGAACG AGAAGACCAA CCTCGAGATC
GTGCACACCG TCTGCGATCT GCTCGATGAA CTCAAGCCCG ACGCCGCCGG CAGCTACCGG
CGCCTGATCA CCTACGTCAA GGATCGCCCC GGCCACGATC GCCGTTACGC CATCGATGCC
CGCAAGGTCG AGCGCGAACT CGGCTGGCGA CCGGCCGAGA CCTTCGAGAC CGGCATCCGC
AAGACGGTGC AGTGGTATCT CGATCATCCG GATTGGGTCG CACACGTTCA AAGTGGTGCG
TACCGGGACT GGGTGTCGCA GAACTACGCC GAGCGCCAGG CGGATTGA
|
|---|
| Protein sequence | MILVTGGAGF IGSNFVLDWL AQSDEPVLNL DVLTYAGNLE NLASLQGDAR HVFVQGDICD
RALIDRLLAE HRPRAIVHFA AESHVDRSIH GPGAFMRTNI EGTYTLLEAA RAHWSGLDDA
AKAAFRFHHV STDEVYGSLG ASDPAFTETK AFEPNSPYSA SKAASDHLVR AWFHTYGLPV
VTTNCSNNYG PYHFPEKLIP LMIVNALASK PLPIYGDGQN VRDWLYVCDH ASAIRAVLAG
GRLGETYNIG GWNEKTNLEI VHTVCDLLDE LKPDAAGSYR RLITYVKDRP GHDRRYAIDA
RKVERELGWR PAETFETGIR KTVQWYLDHP DWVAHVQSGA YRDWVSQNYA ERQAD
|
|---|
| |