| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0602 |
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| Symbol | |
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| ID | 6159880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 651711 |
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| End bp | 653261 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641663352 |
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| Product | protease Do |
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| Protein accession | YP_001789642 |
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| Protein GI | 171057293 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00000000166487 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTGAAC ATTCGTCGCG CACGAGCGTG CACAAGCGAT CCGATTCCAC CCCTCGCAGC
GTTGCCGCCC TGCGCTGGCT CGCCCCCCTG CTGACGGCGG CGTGCCTGCT GCCGACACCG
GCCCTGGCCC AGTCGGGCGG CGCGCAGGCT GCAGCTGCCC AGGCCGGCGC GGCGGCACCG
CTGGTGCGCG GACTGCCCGA CTTCACCGAA CTGGTCGAGC AGGTCGGCCC GGCGGTGGTC
AACATCCGCA CCACCGCCAA GGCCCGCACG GCGCGCTCGG ACAACCCGGC CGACGAGGAG
ATGCAGGAGT TCTTCCGCCG CTTCTTCGGC GTGCCGATCC CGCGCCAGGG CCCACGTCAG
GGGCCGCCCG GCCAGGGCCA GAGCGAAGAA GAAGCGGTGC CGCGCGGCGT CGGCTCGGGC
TTCATCGTCA GCAGCGACGG CTTCGTGATG ACCAACGCGC ATGTGGTCGA GGGCGCCGAC
GAAGTCACGG TGCGCCTGAC CGACAAGCGC GAGTTCAAGG CCCGCGTGGT GGGCGCCGAC
AAGCGCACCG ACATCGCGGT GCTCAAGCTC GACGCCACCG GCCTGCCGGC GGTGCGCCTG
GGCGACGTCA GCCGTCTCAA GGTCGGCGAA TGGGTGATCG CGATCGGCTC GCCCTTCGAT
CTCGACAACA CGGTGACGGC CGGCATCGTC AGCGCCAAGG CGCGTGACAC CGGCGACCTG
GTGCCGTTCA TCCAGACCGA CGTGGCGATC AACCCCGGCA ACTCCGGCGG GCCGCTGATC
AACCTGCGCG GCGAGGTGGT GGGCGTGAAC TCGCAGATCT ACAGCCGCTC GGGCGGCTAC
ATGGGCATCT CGTTCGCGAT CCCGATCGAC GAGGCCAGCC GCGTGGCCGA CCAGCTGCGC
ACCAGCGGCC GGGTGGTGCG CGGGCGCATC GGCGTGCAGA TCGGCGAGGT CACCAAGGAC
GTGGCCGAGT CGCTCGGCCT GGGCAAGGCG GCCGGCGCGC TGGTGCGCTC GGTCGAGGAC
GGCAGCCCGG CCGGCAAGGC GGGCCTGGAA GCCGGTGACA TCGTGACGCG CTTCGACGGC
AAGCCGGTCG AGAAGTGGAA CGACCTGCCG CGCCTGGTCG GCAAGACCGC ACCGGGCACC
AAGACCACGA TCCAGGTGTT CCGCCGCGGC AGCATGCGCG ATCTCAGCGT CACCGTCGCC
GAGCTCGAAG CCGAAGCCGC CGCCAGGCCG GCCAGCACCG AGCCCGCACC GGCCAAGCCG
GCCGCACCCG CCACGGTCAG CCTGCTGGGC CTGACGGTGA GCGACCTGAG TGCCAAGCAG
CGCGAGGAGC TCAAGGTCAA GGGCGGCGTG CGGGTCGACG CGGTGGACGG CGCGGGCGGG
CGGGCCGGCC TGCGCGAGGG CGACATCATC CTGGCGGTGG CCAACACCGA GATCACCAAC
CTGCGCCAGT TCGAGGCGGT GGTCGGCAAG CTCGACAAGA GCAAGCCGGT CAACCTGCTG
TTCCGCCGCG GCGAGTGGGC CCAGTACGCG GTGATCCGGC CCGGCAAATG A
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| Protein sequence | MSEHSSRTSV HKRSDSTPRS VAALRWLAPL LTAACLLPTP ALAQSGGAQA AAAQAGAAAP
LVRGLPDFTE LVEQVGPAVV NIRTTAKART ARSDNPADEE MQEFFRRFFG VPIPRQGPRQ
GPPGQGQSEE EAVPRGVGSG FIVSSDGFVM TNAHVVEGAD EVTVRLTDKR EFKARVVGAD
KRTDIAVLKL DATGLPAVRL GDVSRLKVGE WVIAIGSPFD LDNTVTAGIV SAKARDTGDL
VPFIQTDVAI NPGNSGGPLI NLRGEVVGVN SQIYSRSGGY MGISFAIPID EASRVADQLR
TSGRVVRGRI GVQIGEVTKD VAESLGLGKA AGALVRSVED GSPAGKAGLE AGDIVTRFDG
KPVEKWNDLP RLVGKTAPGT KTTIQVFRRG SMRDLSVTVA ELEAEAAARP ASTEPAPAKP
AAPATVSLLG LTVSDLSAKQ REELKVKGGV RVDAVDGAGG RAGLREGDII LAVANTEITN
LRQFEAVVGK LDKSKPVNLL FRRGEWAQYA VIRPGK
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